Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-187]:
1l5xa_PU0_1-187
CI=4.42


[188-211]:
1l5xa_PU0_188-211
CI=3.06


[212-270 ]:
1l5xa_PU0_212-270
CI=0.55


Level 1
PU
Molecule needs Java 1.4 Structure


[1-187]:
1l5xa_PU1_1-187
CI=4.42


[188-211]:
1l5xa_PU1_188-211
CI=3.06


[212-245]:
1l5xa_PU1_212-245
CI=0.89


[246-270 ]:
1l5xa_PU1_246-270
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-187]:
1l5xa_PU2_1-187
CI=4.42


[188-211]:
1l5xa_PU2_188-211
CI=3.06


[212-229]:
1l5xa_PU2_212-229
CI=1.44


[230-245]:
1l5xa_PU2_230-245
CI=0.00


[246-270 ]:
1l5xa_PU2_246-270
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-84]:
1l5xa_PU3_1-84
CI=3.71


[85-187]:
1l5xa_PU3_85-187
CI=3.14


[188-211]:
1l5xa_PU3_188-211
CI=3.06


[212-229]:
1l5xa_PU3_212-229
CI=1.44


[230-245]:
1l5xa_PU3_230-245
CI=0.00


[246-270 ]:
1l5xa_PU3_246-270
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-84]:
1l5xa_PU4_1-84
CI=3.71


[85-128]:
1l5xa_PU4_85-128
CI=3.24


[129-160]:
1l5xa_PU4_129-160
CI=0.18


[161-187]:
1l5xa_PU4_161-187
CI=0.00


[188-211]:
1l5xa_PU4_188-211
CI=3.06


[212-229]:
1l5xa_PU4_212-229
CI=1.44


[230-245]:
1l5xa_PU4_230-245
CI=0.00


[246-270 ]:
1l5xa_PU4_246-270
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-68]:
1l5xa_PU5_1-68
CI=3.81


[69-84]:
1l5xa_PU5_69-84
CI=0.45


[85-128]:
1l5xa_PU5_85-128
CI=3.24


[129-160]:
1l5xa_PU5_129-160
CI=0.18


[161-187]:
1l5xa_PU5_161-187
CI=0.00


[188-211]:
1l5xa_PU5_188-211
CI=3.06


[212-229]:
1l5xa_PU5_212-229
CI=1.44


[230-245]:
1l5xa_PU5_230-245
CI=0.00


[246-270 ]:
1l5xa_PU5_246-270
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-32]:
1l5xa_PU6_1-32
CI=2.62


[33-68]:
1l5xa_PU6_33-68
CI=2.54


[69-84]:
1l5xa_PU6_69-84
CI=0.45


[85-128]:
1l5xa_PU6_85-128
CI=3.24


[129-160]:
1l5xa_PU6_129-160
CI=0.18


[161-187]:
1l5xa_PU6_161-187
CI=0.00


[188-211]:
1l5xa_PU6_188-211
CI=3.06


[212-229]:
1l5xa_PU6_212-229
CI=1.44


[230-245]:
1l5xa_PU6_230-245
CI=0.00


[246-270 ]:
1l5xa_PU6_246-270
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-32]:
1l5xa_PU7_1-32
CI=2.62


[33-49]:
1l5xa_PU7_33-49
CI=0.21


[50-68]:
1l5xa_PU7_50-68
CI=1.96


[69-84]:
1l5xa_PU7_69-84
CI=0.45


[85-128]:
1l5xa_PU7_85-128
CI=3.24


[129-160]:
1l5xa_PU7_129-160
CI=0.18


[161-187]:
1l5xa_PU7_161-187
CI=0.00


[188-211]:
1l5xa_PU7_188-211
CI=3.06


[212-229]:
1l5xa_PU7_212-229
CI=1.44


[230-245]:
1l5xa_PU7_230-245
CI=0.00


[246-270 ]:
1l5xa_PU7_246-270
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-32]:
1l5xa_PU_1-32
CI=2.62


[33-49]:
1l5xa_PU_33-49
CI=0.21


[50-68]:
1l5xa_PU_50-68
CI=1.96


[69-84]:
1l5xa_PU_69-84
CI=0.45


[85-108]:
1l5xa_PU_85-108
CI=0.94


[109-128]:
1l5xa_PU_109-128
CI=0.56


[129-160]:
1l5xa_PU_129-160
CI=0.18


[161-187]:
1l5xa_PU_161-187
CI=0.00


[188-211]:
1l5xa_PU_188-211
CI=3.06


[212-229]:
1l5xa_PU_212-229
CI=1.44


[230-245]:
1l5xa_PU_230-245
CI=0.00


[246-270 ]:
1l5xa_PU_246-270
CI=0.00