Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-81]:
1l6ra_PU0_1-81
CI=3.23


[82-148]:
1l6ra_PU0_82-148
CI=3.27


[149-225 ]:
1l6ra_PU0_149-225
CI=3.18


Level 1
PU
Molecule needs Java 1.4 Structure


[1-41]:
1l6ra_PU1_1-41
CI=1.58


[42-81]:
1l6ra_PU1_42-81
CI=3.26


[82-148]:
1l6ra_PU1_82-148
CI=3.27


[149-225 ]:
1l6ra_PU1_149-225
CI=3.18


Level 2
PU
Molecule needs Java 1.4 Structure


[1-41]:
1l6ra_PU2_1-41
CI=1.58


[42-81]:
1l6ra_PU2_42-81
CI=3.26


[82-148]:
1l6ra_PU2_82-148
CI=3.27


[149-206]:
1l6ra_PU2_149-206
CI=2.92


[207-225 ]:
1l6ra_PU2_207-225
CI=0.97


Level 3
PU
Molecule needs Java 1.4 Structure


[1-41]:
1l6ra_PU3_1-41
CI=1.58


[42-81]:
1l6ra_PU3_42-81
CI=3.26


[82-148]:
1l6ra_PU3_82-148
CI=3.27


[149-165]:
1l6ra_PU3_149-165
CI=0.10


[166-206]:
1l6ra_PU3_166-206
CI=3.09


[207-225 ]:
1l6ra_PU3_207-225
CI=0.97


Level 4
PU
Molecule needs Java 1.4 Structure


[1-41]:
1l6ra_PU4_1-41
CI=1.58


[42-81]:
1l6ra_PU4_42-81
CI=3.26


[82-115]:
1l6ra_PU4_82-115
CI=1.89


[116-148]:
1l6ra_PU4_116-148
CI=1.79


[149-165]:
1l6ra_PU4_149-165
CI=0.10


[166-206]:
1l6ra_PU4_166-206
CI=3.09


[207-225 ]:
1l6ra_PU4_207-225
CI=0.97


Level 5
PU
Molecule needs Java 1.4 Structure


[1-41]:
1l6ra_PU5_1-41
CI=1.58


[42-81]:
1l6ra_PU5_42-81
CI=3.26


[82-115]:
1l6ra_PU5_82-115
CI=1.89


[116-132]:
1l6ra_PU5_116-132
CI=0.11


[133-148]:
1l6ra_PU5_133-148
CI=2.32


[149-165]:
1l6ra_PU5_149-165
CI=0.10


[166-206]:
1l6ra_PU5_166-206
CI=3.09


[207-225 ]:
1l6ra_PU5_207-225
CI=0.97


Level 6
PU
Molecule needs Java 1.4 Structure


[1-25]:
1l6ra_PU6_1-25
CI=0.82


[26-41]:
1l6ra_PU6_26-41
CI=0.22


[42-81]:
1l6ra_PU6_42-81
CI=3.26


[82-115]:
1l6ra_PU6_82-115
CI=1.89


[116-132]:
1l6ra_PU6_116-132
CI=0.11


[133-148]:
1l6ra_PU6_133-148
CI=2.32


[149-165]:
1l6ra_PU6_149-165
CI=0.10


[166-206]:
1l6ra_PU6_166-206
CI=3.09


[207-225 ]:
1l6ra_PU6_207-225
CI=0.97


Level 7
PU
Molecule needs Java 1.4 Structure


[1-25]:
1l6ra_PU7_1-25
CI=0.82


[26-41]:
1l6ra_PU7_26-41
CI=0.22


[42-81]:
1l6ra_PU7_42-81
CI=3.26


[82-99]:
1l6ra_PU7_82-99
CI=0.00


[100-115]:
1l6ra_PU7_100-115
CI=1.15


[116-132]:
1l6ra_PU7_116-132
CI=0.11


[133-148]:
1l6ra_PU7_133-148
CI=2.32


[149-165]:
1l6ra_PU7_149-165
CI=0.10


[166-206]:
1l6ra_PU7_166-206
CI=3.09


[207-225 ]:
1l6ra_PU7_207-225
CI=0.97


Level 8
PU
Molecule needs Java 1.4 Structure


[1-25]:
1l6ra_PU8_1-25
CI=0.82


[26-41]:
1l6ra_PU8_26-41
CI=0.22


[42-81]:
1l6ra_PU8_42-81
CI=3.26


[82-99]:
1l6ra_PU8_82-99
CI=0.00


[100-115]:
1l6ra_PU8_100-115
CI=1.15


[116-132]:
1l6ra_PU8_116-132
CI=0.11


[133-148]:
1l6ra_PU8_133-148
CI=2.32


[149-165]:
1l6ra_PU8_149-165
CI=0.10


[166-190]:
1l6ra_PU8_166-190
CI=1.74


[191-206]:
1l6ra_PU8_191-206
CI=1.04


[207-225 ]:
1l6ra_PU8_207-225
CI=0.97


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-25]:
1l6ra_PU_1-25
CI=0.82


[26-41]:
1l6ra_PU_26-41
CI=0.22


[42-60]:
1l6ra_PU_42-60
CI=0.28


[61-81]:
1l6ra_PU_61-81
CI=2.51


[82-99]:
1l6ra_PU_82-99
CI=0.00


[100-115]:
1l6ra_PU_100-115
CI=1.15


[116-132]:
1l6ra_PU_116-132
CI=0.11


[133-148]:
1l6ra_PU_133-148
CI=2.32


[149-165]:
1l6ra_PU_149-165
CI=0.10


[166-190]:
1l6ra_PU_166-190
CI=1.74


[191-206]:
1l6ra_PU_191-206
CI=1.04


[207-225 ]:
1l6ra_PU_207-225
CI=0.97