Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-25]:
1l7aa_PU0_1-25
CI=0.00


[26-175]:
1l7aa_PU0_26-175
CI=4.49


[176-318 ]:
1l7aa_PU0_176-318
CI=4.33


Level 1
PU
Molecule needs Java 1.4 Structure


[1-25]:
1l7aa_PU1_1-25
CI=0.00


[26-127]:
1l7aa_PU1_26-127
CI=4.27


[128-149]:
1l7aa_PU1_128-149
CI=2.64


[150-175]:
1l7aa_PU1_150-175
CI=0.51


[176-318 ]:
1l7aa_PU1_176-318
CI=4.33


Level 2
PU
Molecule needs Java 1.4 Structure


[1-25]:
1l7aa_PU2_1-25
CI=0.00


[26-127]:
1l7aa_PU2_26-127
CI=4.27


[128-149]:
1l7aa_PU2_128-149
CI=2.64


[150-175]:
1l7aa_PU2_150-175
CI=0.51


[176-222]:
1l7aa_PU2_176-222
CI=3.17


[223-244]:
1l7aa_PU2_223-244
CI=0.25


[245-318 ]:
1l7aa_PU2_245-318
CI=2.78


Level 3
PU
Molecule needs Java 1.4 Structure


[1-25]:
1l7aa_PU3_1-25
CI=0.00


[26-127]:
1l7aa_PU3_26-127
CI=4.27


[128-149]:
1l7aa_PU3_128-149
CI=2.64


[150-175]:
1l7aa_PU3_150-175
CI=0.51


[176-206]:
1l7aa_PU3_176-206
CI=4.33


[207-222]:
1l7aa_PU3_207-222
CI=0.34


[223-244]:
1l7aa_PU3_223-244
CI=0.25


[245-318 ]:
1l7aa_PU3_245-318
CI=2.78


Level 4
PU
Molecule needs Java 1.4 Structure


[1-25]:
1l7aa_PU4_1-25
CI=0.00


[26-127]:
1l7aa_PU4_26-127
CI=4.27


[128-149]:
1l7aa_PU4_128-149
CI=2.64


[150-175]:
1l7aa_PU4_150-175
CI=0.51


[176-206]:
1l7aa_PU4_176-206
CI=4.33


[207-222]:
1l7aa_PU4_207-222
CI=0.34


[223-244]:
1l7aa_PU4_223-244
CI=0.25


[245-301]:
1l7aa_PU4_245-301
CI=3.37


[302-318 ]:
1l7aa_PU4_302-318
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-25]:
1l7aa_PU5_1-25
CI=0.00


[26-46]:
1l7aa_PU5_26-46
CI=0.00


[47-127]:
1l7aa_PU5_47-127
CI=4.43


[128-149]:
1l7aa_PU5_128-149
CI=2.64


[150-175]:
1l7aa_PU5_150-175
CI=0.51


[176-206]:
1l7aa_PU5_176-206
CI=4.33


[207-222]:
1l7aa_PU5_207-222
CI=0.34


[223-244]:
1l7aa_PU5_223-244
CI=0.25


[245-301]:
1l7aa_PU5_245-301
CI=3.37


[302-318 ]:
1l7aa_PU5_302-318
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-25]:
1l7aa_PU6_1-25
CI=0.00


[26-46]:
1l7aa_PU6_26-46
CI=0.00


[47-71]:
1l7aa_PU6_47-71
CI=1.45


[72-115]:
1l7aa_PU6_72-115
CI=3.13


[116-127]:
1l7aa_PU6_116-127
CI=0.92


[128-149]:
1l7aa_PU6_128-149
CI=2.64


[150-175]:
1l7aa_PU6_150-175
CI=0.51


[176-206]:
1l7aa_PU6_176-206
CI=4.33


[207-222]:
1l7aa_PU6_207-222
CI=0.34


[223-244]:
1l7aa_PU6_223-244
CI=0.25


[245-301]:
1l7aa_PU6_245-301
CI=3.37


[302-318 ]:
1l7aa_PU6_302-318
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-25]:
1l7aa_PU7_1-25
CI=0.00


[26-46]:
1l7aa_PU7_26-46
CI=0.00


[47-71]:
1l7aa_PU7_47-71
CI=1.45


[72-115]:
1l7aa_PU7_72-115
CI=3.13


[116-127]:
1l7aa_PU7_116-127
CI=0.92


[128-149]:
1l7aa_PU7_128-149
CI=2.64


[150-175]:
1l7aa_PU7_150-175
CI=0.51


[176-206]:
1l7aa_PU7_176-206
CI=4.33


[207-222]:
1l7aa_PU7_207-222
CI=0.34


[223-244]:
1l7aa_PU7_223-244
CI=0.25


[245-265]:
1l7aa_PU7_245-265
CI=0.09


[266-301]:
1l7aa_PU7_266-301
CI=1.90


[302-318 ]:
1l7aa_PU7_302-318
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-25]:
1l7aa_PU8_1-25
CI=0.00


[26-46]:
1l7aa_PU8_26-46
CI=0.00


[47-71]:
1l7aa_PU8_47-71
CI=1.45


[72-115]:
1l7aa_PU8_72-115
CI=3.13


[116-127]:
1l7aa_PU8_116-127
CI=0.92


[128-149]:
1l7aa_PU8_128-149
CI=2.64


[150-175]:
1l7aa_PU8_150-175
CI=0.51


[176-206]:
1l7aa_PU8_176-206
CI=4.33


[207-222]:
1l7aa_PU8_207-222
CI=0.34


[223-244]:
1l7aa_PU8_223-244
CI=0.25


[245-265]:
1l7aa_PU8_245-265
CI=0.09


[266-285]:
1l7aa_PU8_266-285
CI=0.37


[286-301]:
1l7aa_PU8_286-301
CI=0.11


[302-318 ]:
1l7aa_PU8_302-318
CI=0.00


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-25]:
1l7aa_PU_1-25
CI=0.00


[26-46]:
1l7aa_PU_26-46
CI=0.00


[47-71]:
1l7aa_PU_47-71
CI=1.45


[72-88]:
1l7aa_PU_72-88
CI=0.21


[89-115]:
1l7aa_PU_89-115
CI=0.76


[116-127]:
1l7aa_PU_116-127
CI=0.92


[128-149]:
1l7aa_PU_128-149
CI=2.64


[150-175]:
1l7aa_PU_150-175
CI=0.51


[176-206]:
1l7aa_PU_176-206
CI=4.33


[207-222]:
1l7aa_PU_207-222
CI=0.34


[223-244]:
1l7aa_PU_223-244
CI=0.25


[245-265]:
1l7aa_PU_245-265
CI=0.09


[266-285]:
1l7aa_PU_266-285
CI=0.37


[286-301]:
1l7aa_PU_286-301
CI=0.11


[302-318 ]:
1l7aa_PU_302-318
CI=0.00