Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-32]:
1l7la_PU0_1-32
CI=0.82


[33-62]:
1l7la_PU0_33-62
CI=2.27


[63-121 ]:
1l7la_PU0_63-121
CI=2.23


Level 1
PU
Molecule needs Java 1.4 Structure


[1-32]:
1l7la_PU1_1-32
CI=0.82


[33-62]:
1l7la_PU1_33-62
CI=2.27


[63-99]:
1l7la_PU1_63-99
CI=3.27


[100-121 ]:
1l7la_PU1_100-121
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-32]:
1l7la_PU_1-32
CI=0.82


[33-62]:
1l7la_PU_33-62
CI=2.27


[63-83]:
1l7la_PU_63-83
CI=1.97


[84-99]:
1l7la_PU_84-99
CI=0.00


[100-121 ]:
1l7la_PU_100-121
CI=0.00