Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-58]:
1l8ra_PU0_1-58
CI=1.85


[59-82]:
1l8ra_PU0_59-82
CI=1.78


[83-100 ]:
1l8ra_PU0_83-100
CI=0.10


Level 1
PU
Molecule needs Java 1.4 Structure


[1-36]:
1l8ra_PU1_1-36
CI=2.28


[37-58]:
1l8ra_PU1_37-58
CI=0.58


[59-82]:
1l8ra_PU1_59-82
CI=1.78


[83-100 ]:
1l8ra_PU1_83-100
CI=0.10


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-17]:
1l8ra_PU_1-17
CI=0.87


[18-36]:
1l8ra_PU_18-36
CI=0.99


[37-58]:
1l8ra_PU_37-58
CI=0.58


[59-82]:
1l8ra_PU_59-82
CI=1.78


[83-100 ]:
1l8ra_PU_83-100
CI=0.10