Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-33]:
1l9la_PU0_1-33
CI=0.97


[34-51]:
1l9la_PU0_34-51
CI=0.82


[52-74 ]:
1l9la_PU0_52-74
CI=0.96


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-17]:
1l9la_PU_1-17
CI=0.00


[18-33]:
1l9la_PU_18-33
CI=0.57


[34-51]:
1l9la_PU_34-51
CI=0.82


[52-74 ]:
1l9la_PU_52-74
CI=0.96