Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-196]:
1lcya_PU0_1-196
CI=5.80


[197-296 ]:
1lcya_PU0_197-296
CI=4.12


Level 1
PU
Molecule needs Java 1.4 Structure


[1-27]:
1lcya_PU1_1-27
CI=0.07


[28-43]:
1lcya_PU1_28-43
CI=2.09


[44-196]:
1lcya_PU1_44-196
CI=6.00


[197-296 ]:
1lcya_PU1_197-296
CI=4.12


Level 2
PU
Molecule needs Java 1.4 Structure


[1-27]:
1lcya_PU2_1-27
CI=0.07


[28-43]:
1lcya_PU2_28-43
CI=2.09


[44-104]:
1lcya_PU2_44-104
CI=4.15


[105-196]:
1lcya_PU2_105-196
CI=5.59


[197-296 ]:
1lcya_PU2_197-296
CI=4.12


Level 3
PU
Molecule needs Java 1.4 Structure


[1-27]:
1lcya_PU3_1-27
CI=0.07


[28-43]:
1lcya_PU3_28-43
CI=2.09


[44-63]:
1lcya_PU3_44-63
CI=1.41


[64-81]:
1lcya_PU3_64-81
CI=1.87


[82-104]:
1lcya_PU3_82-104
CI=1.40


[105-196]:
1lcya_PU3_105-196
CI=5.59


[197-296 ]:
1lcya_PU3_197-296
CI=4.12


Level 4
PU
Molecule needs Java 1.4 Structure


[1-27]:
1lcya_PU4_1-27
CI=0.07


[28-43]:
1lcya_PU4_28-43
CI=2.09


[44-63]:
1lcya_PU4_44-63
CI=1.41


[64-81]:
1lcya_PU4_64-81
CI=1.87


[82-104]:
1lcya_PU4_82-104
CI=1.40


[105-196]:
1lcya_PU4_105-196
CI=5.59


[197-250]:
1lcya_PU4_197-250
CI=2.85


[251-296 ]:
1lcya_PU4_251-296
CI=2.51


Level 5
PU
Molecule needs Java 1.4 Structure


[1-27]:
1lcya_PU5_1-27
CI=0.07


[28-43]:
1lcya_PU5_28-43
CI=2.09


[44-63]:
1lcya_PU5_44-63
CI=1.41


[64-81]:
1lcya_PU5_64-81
CI=1.87


[82-104]:
1lcya_PU5_82-104
CI=1.40


[105-196]:
1lcya_PU5_105-196
CI=5.59


[197-229]:
1lcya_PU5_197-229
CI=0.80


[230-250]:
1lcya_PU5_230-250
CI=1.88


[251-296 ]:
1lcya_PU5_251-296
CI=2.51


Level 6
PU
Molecule needs Java 1.4 Structure


[1-27]:
1lcya_PU6_1-27
CI=0.07


[28-43]:
1lcya_PU6_28-43
CI=2.09


[44-63]:
1lcya_PU6_44-63
CI=1.41


[64-81]:
1lcya_PU6_64-81
CI=1.87


[82-104]:
1lcya_PU6_82-104
CI=1.40


[105-196]:
1lcya_PU6_105-196
CI=5.59


[197-229]:
1lcya_PU6_197-229
CI=0.80


[230-250]:
1lcya_PU6_230-250
CI=1.88


[251-272]:
1lcya_PU6_251-272
CI=0.67


[273-296 ]:
1lcya_PU6_273-296
CI=2.20


Level 7
PU
Molecule needs Java 1.4 Structure


[1-27]:
1lcya_PU7_1-27
CI=0.07


[28-43]:
1lcya_PU7_28-43
CI=2.09


[44-63]:
1lcya_PU7_44-63
CI=1.41


[64-81]:
1lcya_PU7_64-81
CI=1.87


[82-104]:
1lcya_PU7_82-104
CI=1.40


[105-121]:
1lcya_PU7_105-121
CI=0.00


[122-161]:
1lcya_PU7_122-161
CI=3.09


[162-196]:
1lcya_PU7_162-196
CI=2.52


[197-229]:
1lcya_PU7_197-229
CI=0.80


[230-250]:
1lcya_PU7_230-250
CI=1.88


[251-272]:
1lcya_PU7_251-272
CI=0.67


[273-296 ]:
1lcya_PU7_273-296
CI=2.20


Level 8
PU
Molecule needs Java 1.4 Structure


[1-27]:
1lcya_PU8_1-27
CI=0.07


[28-43]:
1lcya_PU8_28-43
CI=2.09


[44-63]:
1lcya_PU8_44-63
CI=1.41


[64-81]:
1lcya_PU8_64-81
CI=1.87


[82-104]:
1lcya_PU8_82-104
CI=1.40


[105-121]:
1lcya_PU8_105-121
CI=0.00


[122-161]:
1lcya_PU8_122-161
CI=3.09


[162-178]:
1lcya_PU8_162-178
CI=1.55


[179-196]:
1lcya_PU8_179-196
CI=0.00


[197-229]:
1lcya_PU8_197-229
CI=0.80


[230-250]:
1lcya_PU8_230-250
CI=1.88


[251-272]:
1lcya_PU8_251-272
CI=0.67


[273-296 ]:
1lcya_PU8_273-296
CI=2.20


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-27]:
1lcya_PU_1-27
CI=0.07


[28-43]:
1lcya_PU_28-43
CI=2.09


[44-63]:
1lcya_PU_44-63
CI=1.41


[64-81]:
1lcya_PU_64-81
CI=1.87


[82-104]:
1lcya_PU_82-104
CI=1.40


[105-121]:
1lcya_PU_105-121
CI=0.00


[122-138]:
1lcya_PU_122-138
CI=1.19


[139-161]:
1lcya_PU_139-161
CI=0.40


[162-178]:
1lcya_PU_162-178
CI=1.55


[179-196]:
1lcya_PU_179-196
CI=0.00


[197-229]:
1lcya_PU_197-229
CI=0.80


[230-250]:
1lcya_PU_230-250
CI=1.88


[251-272]:
1lcya_PU_251-272
CI=0.67


[273-296 ]:
1lcya_PU_273-296
CI=2.20