Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-161]:
1ld8a_PU0_1-161
CI=1.52


[162-313 ]:
1ld8a_PU0_162-313
CI=1.55


Level 1
PU
Molecule needs Java 1.4 Structure


[1-161]:
1ld8a_PU1_1-161
CI=1.52


[162-230]:
1ld8a_PU1_162-230
CI=1.29


[231-313 ]:
1ld8a_PU1_231-313
CI=1.56


Level 2
PU
Molecule needs Java 1.4 Structure


[1-92]:
1ld8a_PU2_1-92
CI=1.49


[93-161]:
1ld8a_PU2_93-161
CI=1.12


[162-230]:
1ld8a_PU2_162-230
CI=1.29


[231-313 ]:
1ld8a_PU2_231-313
CI=1.56


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-92]:
1ld8a_PU_1-92
CI=1.49


[93-161]:
1ld8a_PU_93-161
CI=1.12


[162-195]:
1ld8a_PU_162-195
CI=0.88


[196-230]:
1ld8a_PU_196-230
CI=0.85


[231-313 ]:
1ld8a_PU_231-313
CI=1.56