Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-191]:
1lf2a_PU0_1-191
CI=4.87


[192-308]:
1lf2a_PU0_192-308
CI=4.23


[309-329 ]:
1lf2a_PU0_309-329
CI=1.89


Level 1
PU
Molecule needs Java 1.4 Structure


[1-22]:
1lf2a_PU1_1-22
CI=1.02


[23-137]:
1lf2a_PU1_23-137
CI=4.78


[138-191]:
1lf2a_PU1_138-191
CI=2.17


[192-308]:
1lf2a_PU1_192-308
CI=4.23


[309-329 ]:
1lf2a_PU1_309-329
CI=1.89


Level 2
PU
Molecule needs Java 1.4 Structure


[1-22]:
1lf2a_PU2_1-22
CI=1.02


[23-137]:
1lf2a_PU2_23-137
CI=4.78


[138-173]:
1lf2a_PU2_138-173
CI=3.17


[174-191]:
1lf2a_PU2_174-191
CI=0.00


[192-308]:
1lf2a_PU2_192-308
CI=4.23


[309-329 ]:
1lf2a_PU2_309-329
CI=1.89


Level 3
PU
Molecule needs Java 1.4 Structure


[1-22]:
1lf2a_PU3_1-22
CI=1.02


[23-137]:
1lf2a_PU3_23-137
CI=4.78


[138-173]:
1lf2a_PU3_138-173
CI=3.17


[174-191]:
1lf2a_PU3_174-191
CI=0.00


[192-232]:
1lf2a_PU3_192-232
CI=1.97


[233-287]:
1lf2a_PU3_233-287
CI=2.70


[288-308]:
1lf2a_PU3_288-308
CI=0.17


[309-329 ]:
1lf2a_PU3_309-329
CI=1.89


Level 4
PU
Molecule needs Java 1.4 Structure


[1-22]:
1lf2a_PU4_1-22
CI=1.02


[23-137]:
1lf2a_PU4_23-137
CI=4.78


[138-173]:
1lf2a_PU4_138-173
CI=3.17


[174-191]:
1lf2a_PU4_174-191
CI=0.00


[192-213]:
1lf2a_PU4_192-213
CI=2.75


[214-232]:
1lf2a_PU4_214-232
CI=0.00


[233-287]:
1lf2a_PU4_233-287
CI=2.70


[288-308]:
1lf2a_PU4_288-308
CI=0.17


[309-329 ]:
1lf2a_PU4_309-329
CI=1.89


Level 5
PU
Molecule needs Java 1.4 Structure


[1-22]:
1lf2a_PU5_1-22
CI=1.02


[23-137]:
1lf2a_PU5_23-137
CI=4.78


[138-173]:
1lf2a_PU5_138-173
CI=3.17


[174-191]:
1lf2a_PU5_174-191
CI=0.00


[192-213]:
1lf2a_PU5_192-213
CI=2.75


[214-232]:
1lf2a_PU5_214-232
CI=0.00


[233-254]:
1lf2a_PU5_233-254
CI=1.69


[255-287]:
1lf2a_PU5_255-287
CI=2.03


[288-308]:
1lf2a_PU5_288-308
CI=0.17


[309-329 ]:
1lf2a_PU5_309-329
CI=1.89


Level 6
PU
Molecule needs Java 1.4 Structure


[1-22]:
1lf2a_PU6_1-22
CI=1.02


[23-64]:
1lf2a_PU6_23-64
CI=1.80


[65-112]:
1lf2a_PU6_65-112
CI=3.90


[113-137]:
1lf2a_PU6_113-137
CI=0.30


[138-173]:
1lf2a_PU6_138-173
CI=3.17


[174-191]:
1lf2a_PU6_174-191
CI=0.00


[192-213]:
1lf2a_PU6_192-213
CI=2.75


[214-232]:
1lf2a_PU6_214-232
CI=0.00


[233-254]:
1lf2a_PU6_233-254
CI=1.69


[255-287]:
1lf2a_PU6_255-287
CI=2.03


[288-308]:
1lf2a_PU6_288-308
CI=0.17


[309-329 ]:
1lf2a_PU6_309-329
CI=1.89


Level 7
PU
Molecule needs Java 1.4 Structure


[1-22]:
1lf2a_PU7_1-22
CI=1.02


[23-43]:
1lf2a_PU7_23-43
CI=0.09


[44-64]:
1lf2a_PU7_44-64
CI=0.89


[65-112]:
1lf2a_PU7_65-112
CI=3.90


[113-137]:
1lf2a_PU7_113-137
CI=0.30


[138-173]:
1lf2a_PU7_138-173
CI=3.17


[174-191]:
1lf2a_PU7_174-191
CI=0.00


[192-213]:
1lf2a_PU7_192-213
CI=2.75


[214-232]:
1lf2a_PU7_214-232
CI=0.00


[233-254]:
1lf2a_PU7_233-254
CI=1.69


[255-287]:
1lf2a_PU7_255-287
CI=2.03


[288-308]:
1lf2a_PU7_288-308
CI=0.17


[309-329 ]:
1lf2a_PU7_309-329
CI=1.89


Level 8
PU
Molecule needs Java 1.4 Structure


[1-22]:
1lf2a_PU8_1-22
CI=1.02


[23-43]:
1lf2a_PU8_23-43
CI=0.09


[44-64]:
1lf2a_PU8_44-64
CI=0.89


[65-112]:
1lf2a_PU8_65-112
CI=3.90


[113-137]:
1lf2a_PU8_113-137
CI=0.30


[138-156]:
1lf2a_PU8_138-156
CI=1.07


[157-173]:
1lf2a_PU8_157-173
CI=1.31


[174-191]:
1lf2a_PU8_174-191
CI=0.00


[192-213]:
1lf2a_PU8_192-213
CI=2.75


[214-232]:
1lf2a_PU8_214-232
CI=0.00


[233-254]:
1lf2a_PU8_233-254
CI=1.69


[255-287]:
1lf2a_PU8_255-287
CI=2.03


[288-308]:
1lf2a_PU8_288-308
CI=0.17


[309-329 ]:
1lf2a_PU8_309-329
CI=1.89


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-22]:
1lf2a_PU_1-22
CI=1.02


[23-43]:
1lf2a_PU_23-43
CI=0.09


[44-64]:
1lf2a_PU_44-64
CI=0.89


[65-87]:
1lf2a_PU_65-87
CI=2.46


[88-112]:
1lf2a_PU_88-112
CI=1.37


[113-137]:
1lf2a_PU_113-137
CI=0.30


[138-156]:
1lf2a_PU_138-156
CI=1.07


[157-173]:
1lf2a_PU_157-173
CI=1.31


[174-191]:
1lf2a_PU_174-191
CI=0.00


[192-213]:
1lf2a_PU_192-213
CI=2.75


[214-232]:
1lf2a_PU_214-232
CI=0.00


[233-254]:
1lf2a_PU_233-254
CI=1.69


[255-287]:
1lf2a_PU_255-287
CI=2.03


[288-308]:
1lf2a_PU_288-308
CI=0.17


[309-329 ]:
1lf2a_PU_309-329
CI=1.89