Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-121]:
1lf7a_PU0_1-121
CI=4.69


[122-145]:
1lf7a_PU0_122-145
CI=0.39


[146-164 ]:
1lf7a_PU0_146-164
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-32]:
1lf7a_PU1_1-32
CI=0.00


[33-68]:
1lf7a_PU1_33-68
CI=3.47


[69-121]:
1lf7a_PU1_69-121
CI=3.55


[122-145]:
1lf7a_PU1_122-145
CI=0.39


[146-164 ]:
1lf7a_PU1_146-164
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-32]:
1lf7a_PU2_1-32
CI=0.00


[33-68]:
1lf7a_PU2_33-68
CI=3.47


[69-86]:
1lf7a_PU2_69-86
CI=1.05


[87-121]:
1lf7a_PU2_87-121
CI=3.34


[122-145]:
1lf7a_PU2_122-145
CI=0.39


[146-164 ]:
1lf7a_PU2_146-164
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-32]:
1lf7a_PU_1-32
CI=0.00


[33-50]:
1lf7a_PU_33-50
CI=1.04


[51-68]:
1lf7a_PU_51-68
CI=1.88


[69-86]:
1lf7a_PU_69-86
CI=1.05


[87-121]:
1lf7a_PU_87-121
CI=3.34


[122-145]:
1lf7a_PU_122-145
CI=0.39


[146-164 ]:
1lf7a_PU_146-164
CI=0.00