Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-144]:
1lfka_PU0_1-144
CI=1.26


[145-170]:
1lfka_PU0_145-170
CI=1.51


[171-375 ]:
1lfka_PU0_171-375
CI=2.64


Level 1
PU
Molecule needs Java 1.4 Structure


[1-81]:
1lfka_PU1_1-81
CI=1.40


[82-144]:
1lfka_PU1_82-144
CI=1.05


[145-170]:
1lfka_PU1_145-170
CI=1.51


[171-375 ]:
1lfka_PU1_171-375
CI=2.64


Level 2
PU
Molecule needs Java 1.4 Structure


[1-81]:
1lfka_PU2_1-81
CI=1.40


[82-144]:
1lfka_PU2_82-144
CI=1.05


[145-170]:
1lfka_PU2_145-170
CI=1.51


[171-207]:
1lfka_PU2_171-207
CI=1.47


[208-375 ]:
1lfka_PU2_208-375
CI=2.89


Level 3
PU
Molecule needs Java 1.4 Structure


[1-81]:
1lfka_PU3_1-81
CI=1.40


[82-144]:
1lfka_PU3_82-144
CI=1.05


[145-170]:
1lfka_PU3_145-170
CI=1.51


[171-207]:
1lfka_PU3_171-207
CI=1.47


[208-266]:
1lfka_PU3_208-266
CI=0.81


[267-284]:
1lfka_PU3_267-284
CI=2.70


[285-375 ]:
1lfka_PU3_285-375
CI=1.15


Level 4
PU
Molecule needs Java 1.4 Structure


[1-81]:
1lfka_PU4_1-81
CI=1.40


[82-144]:
1lfka_PU4_82-144
CI=1.05


[145-170]:
1lfka_PU4_145-170
CI=1.51


[171-207]:
1lfka_PU4_171-207
CI=1.47


[208-266]:
1lfka_PU4_208-266
CI=0.81


[267-284]:
1lfka_PU4_267-284
CI=2.70


[285-325]:
1lfka_PU4_285-325
CI=0.88


[326-375 ]:
1lfka_PU4_326-375
CI=1.26


Level 5
PU
Molecule needs Java 1.4 Structure


[1-53]:
1lfka_PU5_1-53
CI=1.37


[54-81]:
1lfka_PU5_54-81
CI=0.80


[82-144]:
1lfka_PU5_82-144
CI=1.05


[145-170]:
1lfka_PU5_145-170
CI=1.51


[171-207]:
1lfka_PU5_171-207
CI=1.47


[208-266]:
1lfka_PU5_208-266
CI=0.81


[267-284]:
1lfka_PU5_267-284
CI=2.70


[285-325]:
1lfka_PU5_285-325
CI=0.88


[326-375 ]:
1lfka_PU5_326-375
CI=1.26


Level 6
PU
Molecule needs Java 1.4 Structure


[1-53]:
1lfka_PU6_1-53
CI=1.37


[54-81]:
1lfka_PU6_54-81
CI=0.80


[82-144]:
1lfka_PU6_82-144
CI=1.05


[145-170]:
1lfka_PU6_145-170
CI=1.51


[171-207]:
1lfka_PU6_171-207
CI=1.47


[208-266]:
1lfka_PU6_208-266
CI=0.81


[267-284]:
1lfka_PU6_267-284
CI=2.70


[285-325]:
1lfka_PU6_285-325
CI=0.88


[326-346]:
1lfka_PU6_326-346
CI=0.00


[347-375 ]:
1lfka_PU6_347-375
CI=1.96


Level 7
PU
Molecule needs Java 1.4 Structure


[1-21]:
1lfka_PU7_1-21
CI=0.79


[22-53]:
1lfka_PU7_22-53
CI=1.49


[54-81]:
1lfka_PU7_54-81
CI=0.80


[82-144]:
1lfka_PU7_82-144
CI=1.05


[145-170]:
1lfka_PU7_145-170
CI=1.51


[171-207]:
1lfka_PU7_171-207
CI=1.47


[208-266]:
1lfka_PU7_208-266
CI=0.81


[267-284]:
1lfka_PU7_267-284
CI=2.70


[285-325]:
1lfka_PU7_285-325
CI=0.88


[326-346]:
1lfka_PU7_326-346
CI=0.00


[347-375 ]:
1lfka_PU7_347-375
CI=1.96


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-21]:
1lfka_PU_1-21
CI=0.79


[22-53]:
1lfka_PU_22-53
CI=1.49


[54-81]:
1lfka_PU_54-81
CI=0.80


[82-100]:
1lfka_PU_82-100
CI=0.09


[101-123]:
1lfka_PU_101-123
CI=0.88


[124-144]:
1lfka_PU_124-144
CI=1.14


[145-170]:
1lfka_PU_145-170
CI=1.51


[171-207]:
1lfka_PU_171-207
CI=1.47


[208-266]:
1lfka_PU_208-266
CI=0.81


[267-284]:
1lfka_PU_267-284
CI=2.70


[285-325]:
1lfka_PU_285-325
CI=0.88


[326-346]:
1lfka_PU_326-346
CI=0.00


[347-375 ]:
1lfka_PU_347-375
CI=1.96