Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-58]:
1lkfa_PU0_1-58
CI=4.28


[59-264]:
1lkfa_PU0_59-264
CI=5.69


[265-292 ]:
1lkfa_PU0_265-292
CI=2.72


Level 1
PU
Molecule needs Java 1.4 Structure


[1-58]:
1lkfa_PU1_1-58
CI=4.28


[59-107]:
1lkfa_PU1_59-107
CI=0.98


[108-138]:
1lkfa_PU1_108-138
CI=4.08


[139-264]:
1lkfa_PU1_139-264
CI=3.22


[265-292 ]:
1lkfa_PU1_265-292
CI=2.72


Level 2
PU
Molecule needs Java 1.4 Structure


[1-58]:
1lkfa_PU2_1-58
CI=4.28


[59-84]:
1lkfa_PU2_59-84
CI=1.52


[85-107]:
1lkfa_PU2_85-107
CI=0.32


[108-138]:
1lkfa_PU2_108-138
CI=4.08


[139-264]:
1lkfa_PU2_139-264
CI=3.22


[265-292 ]:
1lkfa_PU2_265-292
CI=2.72


Level 3
PU
Molecule needs Java 1.4 Structure


[1-58]:
1lkfa_PU3_1-58
CI=4.28


[59-84]:
1lkfa_PU3_59-84
CI=1.52


[85-107]:
1lkfa_PU3_85-107
CI=0.32


[108-138]:
1lkfa_PU3_108-138
CI=4.08


[139-217]:
1lkfa_PU3_139-217
CI=2.56


[218-235]:
1lkfa_PU3_218-235
CI=0.00


[236-264]:
1lkfa_PU3_236-264
CI=2.82


[265-292 ]:
1lkfa_PU3_265-292
CI=2.72


Level 4
PU
Molecule needs Java 1.4 Structure


[1-58]:
1lkfa_PU4_1-58
CI=4.28


[59-84]:
1lkfa_PU4_59-84
CI=1.52


[85-107]:
1lkfa_PU4_85-107
CI=0.32


[108-138]:
1lkfa_PU4_108-138
CI=4.08


[139-162]:
1lkfa_PU4_139-162
CI=2.67


[163-206]:
1lkfa_PU4_163-206
CI=2.03


[207-217]:
1lkfa_PU4_207-217
CI=0.16


[218-235]:
1lkfa_PU4_218-235
CI=0.00


[236-264]:
1lkfa_PU4_236-264
CI=2.82


[265-292 ]:
1lkfa_PU4_265-292
CI=2.72


Level 5
PU
Molecule needs Java 1.4 Structure


[1-58]:
1lkfa_PU5_1-58
CI=4.28


[59-84]:
1lkfa_PU5_59-84
CI=1.52


[85-107]:
1lkfa_PU5_85-107
CI=0.32


[108-138]:
1lkfa_PU5_108-138
CI=4.08


[139-162]:
1lkfa_PU5_139-162
CI=2.67


[163-185]:
1lkfa_PU5_163-185
CI=2.20


[186-206]:
1lkfa_PU5_186-206
CI=1.24


[207-217]:
1lkfa_PU5_207-217
CI=0.16


[218-235]:
1lkfa_PU5_218-235
CI=0.00


[236-264]:
1lkfa_PU5_236-264
CI=2.82


[265-292 ]:
1lkfa_PU5_265-292
CI=2.72


Level 6
PU
Molecule needs Java 1.4 Structure


[1-21]:
1lkfa_PU6_1-21
CI=1.98


[22-58]:
1lkfa_PU6_22-58
CI=3.17


[59-84]:
1lkfa_PU6_59-84
CI=1.52


[85-107]:
1lkfa_PU6_85-107
CI=0.32


[108-138]:
1lkfa_PU6_108-138
CI=4.08


[139-162]:
1lkfa_PU6_139-162
CI=2.67


[163-185]:
1lkfa_PU6_163-185
CI=2.20


[186-206]:
1lkfa_PU6_186-206
CI=1.24


[207-217]:
1lkfa_PU6_207-217
CI=0.16


[218-235]:
1lkfa_PU6_218-235
CI=0.00


[236-264]:
1lkfa_PU6_236-264
CI=2.82


[265-292 ]:
1lkfa_PU6_265-292
CI=2.72


Final level 7

PU
Molecule needs Java 1.4 Structure


[1-21]:
1lkfa_PU_1-21
CI=1.98


[22-38]:
1lkfa_PU_22-38
CI=2.09


[39-58]:
1lkfa_PU_39-58
CI=1.50


[59-84]:
1lkfa_PU_59-84
CI=1.52


[85-107]:
1lkfa_PU_85-107
CI=0.32


[108-138]:
1lkfa_PU_108-138
CI=4.08


[139-162]:
1lkfa_PU_139-162
CI=2.67


[163-185]:
1lkfa_PU_163-185
CI=2.20


[186-206]:
1lkfa_PU_186-206
CI=1.24


[207-217]:
1lkfa_PU_207-217
CI=0.16


[218-235]:
1lkfa_PU_218-235
CI=0.00


[236-264]:
1lkfa_PU_236-264
CI=2.82


[265-292 ]:
1lkfa_PU_265-292
CI=2.72