Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-66]:
1llna_PU0_1-66
CI=3.10


[67-158]:
1llna_PU0_67-158
CI=2.83


[159-248 ]:
1llna_PU0_159-248
CI=2.67


Level 1
PU
Molecule needs Java 1.4 Structure


[1-66]:
1llna_PU1_1-66
CI=3.10


[67-106]:
1llna_PU1_67-106
CI=2.73


[107-158]:
1llna_PU1_107-158
CI=2.05


[159-248 ]:
1llna_PU1_159-248
CI=2.67


Level 2
PU
Molecule needs Java 1.4 Structure


[1-25]:
1llna_PU2_1-25
CI=1.27


[26-43]:
1llna_PU2_26-43
CI=0.82


[44-66]:
1llna_PU2_44-66
CI=2.55


[67-106]:
1llna_PU2_67-106
CI=2.73


[107-158]:
1llna_PU2_107-158
CI=2.05


[159-248 ]:
1llna_PU2_159-248
CI=2.67


Level 3
PU
Molecule needs Java 1.4 Structure


[1-25]:
1llna_PU3_1-25
CI=1.27


[26-43]:
1llna_PU3_26-43
CI=0.82


[44-66]:
1llna_PU3_44-66
CI=2.55


[67-106]:
1llna_PU3_67-106
CI=2.73


[107-158]:
1llna_PU3_107-158
CI=2.05


[159-192]:
1llna_PU3_159-192
CI=1.20


[193-248 ]:
1llna_PU3_193-248
CI=2.34


Level 4
PU
Molecule needs Java 1.4 Structure


[1-25]:
1llna_PU4_1-25
CI=1.27


[26-43]:
1llna_PU4_26-43
CI=0.82


[44-66]:
1llna_PU4_44-66
CI=2.55


[67-106]:
1llna_PU4_67-106
CI=2.73


[107-123]:
1llna_PU4_107-123
CI=0.74


[124-158]:
1llna_PU4_124-158
CI=1.52


[159-192]:
1llna_PU4_159-192
CI=1.20


[193-248 ]:
1llna_PU4_193-248
CI=2.34


Level 5
PU
Molecule needs Java 1.4 Structure


[1-25]:
1llna_PU5_1-25
CI=1.27


[26-43]:
1llna_PU5_26-43
CI=0.82


[44-66]:
1llna_PU5_44-66
CI=2.55


[67-106]:
1llna_PU5_67-106
CI=2.73


[107-123]:
1llna_PU5_107-123
CI=0.74


[124-158]:
1llna_PU5_124-158
CI=1.52


[159-175]:
1llna_PU5_159-175
CI=0.52


[176-192]:
1llna_PU5_176-192
CI=0.11


[193-248 ]:
1llna_PU5_193-248
CI=2.34


Level 6
PU
Molecule needs Java 1.4 Structure


[1-25]:
1llna_PU6_1-25
CI=1.27


[26-43]:
1llna_PU6_26-43
CI=0.82


[44-66]:
1llna_PU6_44-66
CI=2.55


[67-106]:
1llna_PU6_67-106
CI=2.73


[107-123]:
1llna_PU6_107-123
CI=0.74


[124-158]:
1llna_PU6_124-158
CI=1.52


[159-175]:
1llna_PU6_159-175
CI=0.52


[176-192]:
1llna_PU6_176-192
CI=0.11


[193-227]:
1llna_PU6_193-227
CI=1.58


[228-248 ]:
1llna_PU6_228-248
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-25]:
1llna_PU7_1-25
CI=1.27


[26-43]:
1llna_PU7_26-43
CI=0.82


[44-66]:
1llna_PU7_44-66
CI=2.55


[67-106]:
1llna_PU7_67-106
CI=2.73


[107-123]:
1llna_PU7_107-123
CI=0.74


[124-158]:
1llna_PU7_124-158
CI=1.52


[159-175]:
1llna_PU7_159-175
CI=0.52


[176-192]:
1llna_PU7_176-192
CI=0.11


[193-211]:
1llna_PU7_193-211
CI=0.29


[212-227]:
1llna_PU7_212-227
CI=1.74


[228-248 ]:
1llna_PU7_228-248
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-25]:
1llna_PU8_1-25
CI=1.27


[26-43]:
1llna_PU8_26-43
CI=0.82


[44-66]:
1llna_PU8_44-66
CI=2.55


[67-106]:
1llna_PU8_67-106
CI=2.73


[107-123]:
1llna_PU8_107-123
CI=0.74


[124-140]:
1llna_PU8_124-140
CI=0.00


[141-158]:
1llna_PU8_141-158
CI=0.31


[159-175]:
1llna_PU8_159-175
CI=0.52


[176-192]:
1llna_PU8_176-192
CI=0.11


[193-211]:
1llna_PU8_193-211
CI=0.29


[212-227]:
1llna_PU8_212-227
CI=1.74


[228-248 ]:
1llna_PU8_228-248
CI=0.00


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-25]:
1llna_PU_1-25
CI=1.27


[26-43]:
1llna_PU_26-43
CI=0.82


[44-66]:
1llna_PU_44-66
CI=2.55


[67-88]:
1llna_PU_67-88
CI=2.30


[89-106]:
1llna_PU_89-106
CI=0.41


[107-123]:
1llna_PU_107-123
CI=0.74


[124-140]:
1llna_PU_124-140
CI=0.00


[141-158]:
1llna_PU_141-158
CI=0.31


[159-175]:
1llna_PU_159-175
CI=0.52


[176-192]:
1llna_PU_176-192
CI=0.11


[193-211]:
1llna_PU_193-211
CI=0.29


[212-227]:
1llna_PU_212-227
CI=1.74


[228-248 ]:
1llna_PU_228-248
CI=0.00