Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-90]:
1lm8b_PU0_1-90
CI=4.09


[91-106 ]:
1lm8b_PU0_91-106
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-20]:
1lm8b_PU1_1-20
CI=2.72


[21-61]:
1lm8b_PU1_21-61
CI=2.51


[62-90]:
1lm8b_PU1_62-90
CI=0.84


[91-106 ]:
1lm8b_PU1_91-106
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-20]:
1lm8b_PU_1-20
CI=2.72


[21-45]:
1lm8b_PU_21-45
CI=1.57


[46-61]:
1lm8b_PU_46-61
CI=0.45


[62-90]:
1lm8b_PU_62-90
CI=0.84


[91-106 ]:
1lm8b_PU_91-106
CI=0.00