Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-30]:
1lmia_PU0_1-30
CI=2.29


[31-114]:
1lmia_PU0_31-114
CI=4.88


[115-131 ]:
1lmia_PU0_115-131
CI=2.30


Level 1
PU
Molecule needs Java 1.4 Structure


[1-30]:
1lmia_PU1_1-30
CI=2.29


[31-49]:
1lmia_PU1_31-49
CI=1.37


[50-106]:
1lmia_PU1_50-106
CI=4.48


[107-114]:
1lmia_PU1_107-114
CI=0.00


[115-131 ]:
1lmia_PU1_115-131
CI=2.30


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-30]:
1lmia_PU_1-30
CI=2.29


[31-49]:
1lmia_PU_31-49
CI=1.37


[50-80]:
1lmia_PU_50-80
CI=1.53


[81-106]:
1lmia_PU_81-106
CI=2.23


[107-114]:
1lmia_PU_107-114
CI=0.00


[115-131 ]:
1lmia_PU_115-131
CI=2.30