Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-51]:
1lpla_PU0_1-51
CI=3.50


[52-76]:
1lpla_PU0_52-76
CI=3.84


[77-95 ]:
1lpla_PU0_77-95
CI=0.00


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-19]:
1lpla_PU_1-19
CI=0.00


[20-51]:
1lpla_PU_20-51
CI=3.04


[52-76]:
1lpla_PU_52-76
CI=3.84


[77-95 ]:
1lpla_PU_77-95
CI=0.00