Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-206]:
1lqaa_PU0_1-206
CI=4.03


[207-346 ]:
1lqaa_PU0_207-346
CI=2.77


Level 1
PU
Molecule needs Java 1.4 Structure


[1-87]:
1lqaa_PU1_1-87
CI=3.68


[88-206]:
1lqaa_PU1_88-206
CI=3.14


[207-346 ]:
1lqaa_PU1_207-346
CI=2.77


Level 2
PU
Molecule needs Java 1.4 Structure


[1-87]:
1lqaa_PU2_1-87
CI=3.68


[88-206]:
1lqaa_PU2_88-206
CI=3.14


[207-235]:
1lqaa_PU2_207-235
CI=1.36


[236-288]:
1lqaa_PU2_236-288
CI=1.61


[289-346 ]:
1lqaa_PU2_289-346
CI=1.07


Level 3
PU
Molecule needs Java 1.4 Structure


[1-87]:
1lqaa_PU3_1-87
CI=3.68


[88-206]:
1lqaa_PU3_88-206
CI=3.14


[207-235]:
1lqaa_PU3_207-235
CI=1.36


[236-288]:
1lqaa_PU3_236-288
CI=1.61


[289-326]:
1lqaa_PU3_289-326
CI=1.53


[327-346 ]:
1lqaa_PU3_327-346
CI=0.09


Level 4
PU
Molecule needs Java 1.4 Structure


[1-87]:
1lqaa_PU4_1-87
CI=3.68


[88-136]:
1lqaa_PU4_88-136
CI=1.68


[137-152]:
1lqaa_PU4_137-152
CI=0.69


[153-206]:
1lqaa_PU4_153-206
CI=2.06


[207-235]:
1lqaa_PU4_207-235
CI=1.36


[236-288]:
1lqaa_PU4_236-288
CI=1.61


[289-326]:
1lqaa_PU4_289-326
CI=1.53


[327-346 ]:
1lqaa_PU4_327-346
CI=0.09


Level 5
PU
Molecule needs Java 1.4 Structure


[1-87]:
1lqaa_PU5_1-87
CI=3.68


[88-136]:
1lqaa_PU5_88-136
CI=1.68


[137-152]:
1lqaa_PU5_137-152
CI=0.69


[153-206]:
1lqaa_PU5_153-206
CI=2.06


[207-235]:
1lqaa_PU5_207-235
CI=1.36


[236-266]:
1lqaa_PU5_236-266
CI=1.45


[267-288]:
1lqaa_PU5_267-288
CI=0.34


[289-326]:
1lqaa_PU5_289-326
CI=1.53


[327-346 ]:
1lqaa_PU5_327-346
CI=0.09


Level 6
PU
Molecule needs Java 1.4 Structure


[1-18]:
1lqaa_PU6_1-18
CI=2.08


[19-87]:
1lqaa_PU6_19-87
CI=3.09


[88-136]:
1lqaa_PU6_88-136
CI=1.68


[137-152]:
1lqaa_PU6_137-152
CI=0.69


[153-206]:
1lqaa_PU6_153-206
CI=2.06


[207-235]:
1lqaa_PU6_207-235
CI=1.36


[236-266]:
1lqaa_PU6_236-266
CI=1.45


[267-288]:
1lqaa_PU6_267-288
CI=0.34


[289-326]:
1lqaa_PU6_289-326
CI=1.53


[327-346 ]:
1lqaa_PU6_327-346
CI=0.09


Level 7
PU
Molecule needs Java 1.4 Structure


[1-18]:
1lqaa_PU7_1-18
CI=2.08


[19-87]:
1lqaa_PU7_19-87
CI=3.09


[88-113]:
1lqaa_PU7_88-113
CI=1.30


[114-136]:
1lqaa_PU7_114-136
CI=0.32


[137-152]:
1lqaa_PU7_137-152
CI=0.69


[153-206]:
1lqaa_PU7_153-206
CI=2.06


[207-235]:
1lqaa_PU7_207-235
CI=1.36


[236-266]:
1lqaa_PU7_236-266
CI=1.45


[267-288]:
1lqaa_PU7_267-288
CI=0.34


[289-326]:
1lqaa_PU7_289-326
CI=1.53


[327-346 ]:
1lqaa_PU7_327-346
CI=0.09


Level 8
PU
Molecule needs Java 1.4 Structure


[1-18]:
1lqaa_PU8_1-18
CI=2.08


[19-87]:
1lqaa_PU8_19-87
CI=3.09


[88-113]:
1lqaa_PU8_88-113
CI=1.30


[114-136]:
1lqaa_PU8_114-136
CI=0.32


[137-152]:
1lqaa_PU8_137-152
CI=0.69


[153-178]:
1lqaa_PU8_153-178
CI=0.36


[179-206]:
1lqaa_PU8_179-206
CI=1.41


[207-235]:
1lqaa_PU8_207-235
CI=1.36


[236-266]:
1lqaa_PU8_236-266
CI=1.45


[267-288]:
1lqaa_PU8_267-288
CI=0.34


[289-326]:
1lqaa_PU8_289-326
CI=1.53


[327-346 ]:
1lqaa_PU8_327-346
CI=0.09


Level 9
PU
Molecule needs Java 1.4 Structure


[1-18]:
1lqaa_PU9_1-18
CI=2.08


[19-87]:
1lqaa_PU9_19-87
CI=3.09


[88-113]:
1lqaa_PU9_88-113
CI=1.30


[114-136]:
1lqaa_PU9_114-136
CI=0.32


[137-152]:
1lqaa_PU9_137-152
CI=0.69


[153-178]:
1lqaa_PU9_153-178
CI=0.36


[179-206]:
1lqaa_PU9_179-206
CI=1.41


[207-235]:
1lqaa_PU9_207-235
CI=1.36


[236-266]:
1lqaa_PU9_236-266
CI=1.45


[267-288]:
1lqaa_PU9_267-288
CI=0.34


[289-306]:
1lqaa_PU9_289-306
CI=0.61


[307-326]:
1lqaa_PU9_307-326
CI=0.27


[327-346 ]:
1lqaa_PU9_327-346
CI=0.09


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-18]:
1lqaa_PU_1-18
CI=2.08


[19-69]:
1lqaa_PU_19-69
CI=3.03


[70-87]:
1lqaa_PU_70-87
CI=0.10


[88-113]:
1lqaa_PU_88-113
CI=1.30


[114-136]:
1lqaa_PU_114-136
CI=0.32


[137-152]:
1lqaa_PU_137-152
CI=0.69


[153-178]:
1lqaa_PU_153-178
CI=0.36


[179-206]:
1lqaa_PU_179-206
CI=1.41


[207-235]:
1lqaa_PU_207-235
CI=1.36


[236-266]:
1lqaa_PU_236-266
CI=1.45


[267-288]:
1lqaa_PU_267-288
CI=0.34


[289-306]:
1lqaa_PU_289-306
CI=0.61


[307-326]:
1lqaa_PU_307-326
CI=0.27


[327-346 ]:
1lqaa_PU_327-346
CI=0.09