Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-19]:
1lqva_PU0_1-19
CI=0.30


[20-69]:
1lqva_PU0_20-69
CI=2.12


[70-172 ]:
1lqva_PU0_70-172
CI=2.95


Level 1
PU
Molecule needs Java 1.4 Structure


[1-19]:
1lqva_PU1_1-19
CI=0.30


[20-50]:
1lqva_PU1_20-50
CI=3.03


[51-69]:
1lqva_PU1_51-69
CI=0.00


[70-172 ]:
1lqva_PU1_70-172
CI=2.95


Level 2
PU
Molecule needs Java 1.4 Structure


[1-19]:
1lqva_PU2_1-19
CI=0.30


[20-50]:
1lqva_PU2_20-50
CI=3.03


[51-69]:
1lqva_PU2_51-69
CI=0.00


[70-87]:
1lqva_PU2_70-87
CI=0.10


[88-172 ]:
1lqva_PU2_88-172
CI=3.17


Level 3
PU
Molecule needs Java 1.4 Structure


[1-19]:
1lqva_PU3_1-19
CI=0.30


[20-50]:
1lqva_PU3_20-50
CI=3.03


[51-69]:
1lqva_PU3_51-69
CI=0.00


[70-87]:
1lqva_PU3_70-87
CI=0.10


[88-113]:
1lqva_PU3_88-113
CI=2.99


[114-159]:
1lqva_PU3_114-159
CI=2.35


[160-172 ]:
1lqva_PU3_160-172
CI=0.00


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-19]:
1lqva_PU_1-19
CI=0.30


[20-50]:
1lqva_PU_20-50
CI=3.03


[51-69]:
1lqva_PU_51-69
CI=0.00


[70-87]:
1lqva_PU_70-87
CI=0.10


[88-113]:
1lqva_PU_88-113
CI=2.99


[114-143]:
1lqva_PU_114-143
CI=1.76


[144-159]:
1lqva_PU_144-159
CI=0.57


[160-172 ]:
1lqva_PU_160-172
CI=0.00