Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-93]:
1ls1a_PU0_1-93
CI=1.79


[94-211]:
1ls1a_PU0_94-211
CI=3.18


[212-289 ]:
1ls1a_PU0_212-289
CI=3.34


Level 1
PU
Molecule needs Java 1.4 Structure


[1-93]:
1ls1a_PU1_1-93
CI=1.79


[94-211]:
1ls1a_PU1_94-211
CI=3.18


[212-273]:
1ls1a_PU1_212-273
CI=3.78


[274-289 ]:
1ls1a_PU1_274-289
CI=0.23


Level 2
PU
Molecule needs Java 1.4 Structure


[1-77]:
1ls1a_PU2_1-77
CI=1.86


[78-93]:
1ls1a_PU2_78-93
CI=0.00


[94-211]:
1ls1a_PU2_94-211
CI=3.18


[212-273]:
1ls1a_PU2_212-273
CI=3.78


[274-289 ]:
1ls1a_PU2_274-289
CI=0.23


Level 3
PU
Molecule needs Java 1.4 Structure


[1-77]:
1ls1a_PU3_1-77
CI=1.86


[78-93]:
1ls1a_PU3_78-93
CI=0.00


[94-192]:
1ls1a_PU3_94-192
CI=3.39


[193-211]:
1ls1a_PU3_193-211
CI=0.00


[212-273]:
1ls1a_PU3_212-273
CI=3.78


[274-289 ]:
1ls1a_PU3_274-289
CI=0.23


Level 4
PU
Molecule needs Java 1.4 Structure


[1-34]:
1ls1a_PU4_1-34
CI=0.72


[35-54]:
1ls1a_PU4_35-54
CI=0.66


[55-77]:
1ls1a_PU4_55-77
CI=0.97


[78-93]:
1ls1a_PU4_78-93
CI=0.00


[94-192]:
1ls1a_PU4_94-192
CI=3.39


[193-211]:
1ls1a_PU4_193-211
CI=0.00


[212-273]:
1ls1a_PU4_212-273
CI=3.78


[274-289 ]:
1ls1a_PU4_274-289
CI=0.23


Level 5
PU
Molecule needs Java 1.4 Structure


[1-34]:
1ls1a_PU5_1-34
CI=0.72


[35-54]:
1ls1a_PU5_35-54
CI=0.66


[55-77]:
1ls1a_PU5_55-77
CI=0.97


[78-93]:
1ls1a_PU5_78-93
CI=0.00


[94-127]:
1ls1a_PU5_94-127
CI=0.33


[128-181]:
1ls1a_PU5_128-181
CI=2.33


[182-192]:
1ls1a_PU5_182-192
CI=0.00


[193-211]:
1ls1a_PU5_193-211
CI=0.00


[212-273]:
1ls1a_PU5_212-273
CI=3.78


[274-289 ]:
1ls1a_PU5_274-289
CI=0.23


Level 6
PU
Molecule needs Java 1.4 Structure


[1-34]:
1ls1a_PU6_1-34
CI=0.72


[35-54]:
1ls1a_PU6_35-54
CI=0.66


[55-77]:
1ls1a_PU6_55-77
CI=0.97


[78-93]:
1ls1a_PU6_78-93
CI=0.00


[94-127]:
1ls1a_PU6_94-127
CI=0.33


[128-162]:
1ls1a_PU6_128-162
CI=2.86


[163-181]:
1ls1a_PU6_163-181
CI=0.00


[182-192]:
1ls1a_PU6_182-192
CI=0.00


[193-211]:
1ls1a_PU6_193-211
CI=0.00


[212-273]:
1ls1a_PU6_212-273
CI=3.78


[274-289 ]:
1ls1a_PU6_274-289
CI=0.23


Level 7
PU
Molecule needs Java 1.4 Structure


[1-34]:
1ls1a_PU7_1-34
CI=0.72


[35-54]:
1ls1a_PU7_35-54
CI=0.66


[55-77]:
1ls1a_PU7_55-77
CI=0.97


[78-93]:
1ls1a_PU7_78-93
CI=0.00


[94-111]:
1ls1a_PU7_94-111
CI=0.31


[112-127]:
1ls1a_PU7_112-127
CI=0.00


[128-162]:
1ls1a_PU7_128-162
CI=2.86


[163-181]:
1ls1a_PU7_163-181
CI=0.00


[182-192]:
1ls1a_PU7_182-192
CI=0.00


[193-211]:
1ls1a_PU7_193-211
CI=0.00


[212-273]:
1ls1a_PU7_212-273
CI=3.78


[274-289 ]:
1ls1a_PU7_274-289
CI=0.23


Level 8
PU
Molecule needs Java 1.4 Structure


[1-18]:
1ls1a_PU8_1-18
CI=0.00


[19-34]:
1ls1a_PU8_19-34
CI=0.00


[35-54]:
1ls1a_PU8_35-54
CI=0.66


[55-77]:
1ls1a_PU8_55-77
CI=0.97


[78-93]:
1ls1a_PU8_78-93
CI=0.00


[94-111]:
1ls1a_PU8_94-111
CI=0.31


[112-127]:
1ls1a_PU8_112-127
CI=0.00


[128-162]:
1ls1a_PU8_128-162
CI=2.86


[163-181]:
1ls1a_PU8_163-181
CI=0.00


[182-192]:
1ls1a_PU8_182-192
CI=0.00


[193-211]:
1ls1a_PU8_193-211
CI=0.00


[212-273]:
1ls1a_PU8_212-273
CI=3.78


[274-289 ]:
1ls1a_PU8_274-289
CI=0.23


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-18]:
1ls1a_PU_1-18
CI=0.00


[19-34]:
1ls1a_PU_19-34
CI=0.00


[35-54]:
1ls1a_PU_35-54
CI=0.66


[55-77]:
1ls1a_PU_55-77
CI=0.97


[78-93]:
1ls1a_PU_78-93
CI=0.00


[94-111]:
1ls1a_PU_94-111
CI=0.31


[112-127]:
1ls1a_PU_112-127
CI=0.00


[128-162]:
1ls1a_PU_128-162
CI=2.86


[163-181]:
1ls1a_PU_163-181
CI=0.00


[182-192]:
1ls1a_PU_182-192
CI=0.00


[193-211]:
1ls1a_PU_193-211
CI=0.00


[212-239]:
1ls1a_PU_212-239
CI=1.00


[240-273]:
1ls1a_PU_240-273
CI=2.36


[274-289 ]:
1ls1a_PU_274-289
CI=0.23