Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-56]:
1lsla_PU0_1-56
CI=4.66


[57-113 ]:
1lsla_PU0_57-113
CI=4.58


Level 1
PU
Molecule needs Java 1.4 Structure


[1-56]:
1lsla_PU1_1-56
CI=4.66


[57-97]:
1lsla_PU1_57-97
CI=3.57


[98-113 ]:
1lsla_PU1_98-113
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-40]:
1lsla_PU2_1-40
CI=3.60


[41-56]:
1lsla_PU2_41-56
CI=0.00


[57-97]:
1lsla_PU2_57-97
CI=3.57


[98-113 ]:
1lsla_PU2_98-113
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-40]:
1lsla_PU3_1-40
CI=3.60


[41-56]:
1lsla_PU3_41-56
CI=0.00


[57-76]:
1lsla_PU3_57-76
CI=0.00


[77-97]:
1lsla_PU3_77-97
CI=0.09


[98-113 ]:
1lsla_PU3_98-113
CI=0.00


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-18]:
1lsla_PU_1-18
CI=0.00


[19-40]:
1lsla_PU_19-40
CI=0.25


[41-56]:
1lsla_PU_41-56
CI=0.00


[57-76]:
1lsla_PU_57-76
CI=0.00


[77-97]:
1lsla_PU_77-97
CI=0.09


[98-113 ]:
1lsla_PU_98-113
CI=0.00