Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-52]:
1luca_PU0_1-52
CI=2.51


[53-171]:
1luca_PU0_53-171
CI=3.21


[172-326 ]:
1luca_PU0_172-326
CI=3.06


Level 1
PU
Molecule needs Java 1.4 Structure


[1-52]:
1luca_PU1_1-52
CI=2.51


[53-171]:
1luca_PU1_53-171
CI=3.21


[172-245]:
1luca_PU1_172-245
CI=2.10


[246-261]:
1luca_PU1_246-261
CI=0.00


[262-326 ]:
1luca_PU1_262-326
CI=1.41


Level 2
PU
Molecule needs Java 1.4 Structure


[1-52]:
1luca_PU2_1-52
CI=2.51


[53-171]:
1luca_PU2_53-171
CI=3.21


[172-228]:
1luca_PU2_172-228
CI=2.45


[229-245]:
1luca_PU2_229-245
CI=0.75


[246-261]:
1luca_PU2_246-261
CI=0.00


[262-326 ]:
1luca_PU2_262-326
CI=1.41


Level 3
PU
Molecule needs Java 1.4 Structure


[1-52]:
1luca_PU3_1-52
CI=2.51


[53-107]:
1luca_PU3_53-107
CI=2.17


[108-124]:
1luca_PU3_108-124
CI=0.65


[125-171]:
1luca_PU3_125-171
CI=1.79


[172-228]:
1luca_PU3_172-228
CI=2.45


[229-245]:
1luca_PU3_229-245
CI=0.75


[246-261]:
1luca_PU3_246-261
CI=0.00


[262-326 ]:
1luca_PU3_262-326
CI=1.41


Level 4
PU
Molecule needs Java 1.4 Structure


[1-52]:
1luca_PU4_1-52
CI=2.51


[53-107]:
1luca_PU4_53-107
CI=2.17


[108-124]:
1luca_PU4_108-124
CI=0.65


[125-171]:
1luca_PU4_125-171
CI=1.79


[172-228]:
1luca_PU4_172-228
CI=2.45


[229-245]:
1luca_PU4_229-245
CI=0.75


[246-261]:
1luca_PU4_246-261
CI=0.00


[262-282]:
1luca_PU4_262-282
CI=0.98


[283-326 ]:
1luca_PU4_283-326
CI=1.07


Level 5
PU
Molecule needs Java 1.4 Structure


[1-52]:
1luca_PU5_1-52
CI=2.51


[53-107]:
1luca_PU5_53-107
CI=2.17


[108-124]:
1luca_PU5_108-124
CI=0.65


[125-171]:
1luca_PU5_125-171
CI=1.79


[172-228]:
1luca_PU5_172-228
CI=2.45


[229-245]:
1luca_PU5_229-245
CI=0.75


[246-261]:
1luca_PU5_246-261
CI=0.00


[262-282]:
1luca_PU5_262-282
CI=0.98


[283-310]:
1luca_PU5_283-310
CI=0.73


[311-326 ]:
1luca_PU5_311-326
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-52]:
1luca_PU6_1-52
CI=2.51


[53-107]:
1luca_PU6_53-107
CI=2.17


[108-124]:
1luca_PU6_108-124
CI=0.65


[125-141]:
1luca_PU6_125-141
CI=0.00


[142-171]:
1luca_PU6_142-171
CI=1.52


[172-228]:
1luca_PU6_172-228
CI=2.45


[229-245]:
1luca_PU6_229-245
CI=0.75


[246-261]:
1luca_PU6_246-261
CI=0.00


[262-282]:
1luca_PU6_262-282
CI=0.98


[283-310]:
1luca_PU6_283-310
CI=0.73


[311-326 ]:
1luca_PU6_311-326
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-52]:
1luca_PU7_1-52
CI=2.51


[53-107]:
1luca_PU7_53-107
CI=2.17


[108-124]:
1luca_PU7_108-124
CI=0.65


[125-141]:
1luca_PU7_125-141
CI=0.00


[142-171]:
1luca_PU7_142-171
CI=1.52


[172-191]:
1luca_PU7_172-191
CI=1.49


[192-228]:
1luca_PU7_192-228
CI=0.87


[229-245]:
1luca_PU7_229-245
CI=0.75


[246-261]:
1luca_PU7_246-261
CI=0.00


[262-282]:
1luca_PU7_262-282
CI=0.98


[283-310]:
1luca_PU7_283-310
CI=0.73


[311-326 ]:
1luca_PU7_311-326
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-52]:
1luca_PU8_1-52
CI=2.51


[53-107]:
1luca_PU8_53-107
CI=2.17


[108-124]:
1luca_PU8_108-124
CI=0.65


[125-141]:
1luca_PU8_125-141
CI=0.00


[142-171]:
1luca_PU8_142-171
CI=1.52


[172-191]:
1luca_PU8_172-191
CI=1.49


[192-208]:
1luca_PU8_192-208
CI=0.21


[209-228]:
1luca_PU8_209-228
CI=0.28


[229-245]:
1luca_PU8_229-245
CI=0.75


[246-261]:
1luca_PU8_246-261
CI=0.00


[262-282]:
1luca_PU8_262-282
CI=0.98


[283-310]:
1luca_PU8_283-310
CI=0.73


[311-326 ]:
1luca_PU8_311-326
CI=0.00


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-52]:
1luca_PU_1-52
CI=2.51


[53-76]:
1luca_PU_53-76
CI=0.70


[77-107]:
1luca_PU_77-107
CI=0.85


[108-124]:
1luca_PU_108-124
CI=0.65


[125-141]:
1luca_PU_125-141
CI=0.00


[142-171]:
1luca_PU_142-171
CI=1.52


[172-191]:
1luca_PU_172-191
CI=1.49


[192-208]:
1luca_PU_192-208
CI=0.21


[209-228]:
1luca_PU_209-228
CI=0.28


[229-245]:
1luca_PU_229-245
CI=0.75


[246-261]:
1luca_PU_246-261
CI=0.00


[262-282]:
1luca_PU_262-282
CI=0.98


[283-310]:
1luca_PU_283-310
CI=0.73


[311-326 ]:
1luca_PU_311-326
CI=0.00