Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-162]:
1lura_PU0_1-162
CI=5.14


[163-292]:
1lura_PU0_163-292
CI=4.79


[293-323 ]:
1lura_PU0_293-323
CI=0.42


Level 1
PU
Molecule needs Java 1.4 Structure


[1-64]:
1lura_PU1_1-64
CI=3.04


[65-89]:
1lura_PU1_65-89
CI=2.71


[90-162]:
1lura_PU1_90-162
CI=3.37


[163-292]:
1lura_PU1_163-292
CI=4.79


[293-323 ]:
1lura_PU1_293-323
CI=0.42


Level 2
PU
Molecule needs Java 1.4 Structure


[1-64]:
1lura_PU2_1-64
CI=3.04


[65-89]:
1lura_PU2_65-89
CI=2.71


[90-162]:
1lura_PU2_90-162
CI=3.37


[163-180]:
1lura_PU2_163-180
CI=0.70


[181-205]:
1lura_PU2_181-205
CI=2.64


[206-292]:
1lura_PU2_206-292
CI=3.23


[293-323 ]:
1lura_PU2_293-323
CI=0.42


Level 3
PU
Molecule needs Java 1.4 Structure


[1-64]:
1lura_PU3_1-64
CI=3.04


[65-89]:
1lura_PU3_65-89
CI=2.71


[90-162]:
1lura_PU3_90-162
CI=3.37


[163-180]:
1lura_PU3_163-180
CI=0.70


[181-205]:
1lura_PU3_181-205
CI=2.64


[206-236]:
1lura_PU3_206-236
CI=0.36


[237-257]:
1lura_PU3_237-257
CI=2.42


[258-292]:
1lura_PU3_258-292
CI=3.43


[293-323 ]:
1lura_PU3_293-323
CI=0.42


Level 4
PU
Molecule needs Java 1.4 Structure


[1-40]:
1lura_PU4_1-40
CI=3.27


[41-64]:
1lura_PU4_41-64
CI=0.54


[65-89]:
1lura_PU4_65-89
CI=2.71


[90-162]:
1lura_PU4_90-162
CI=3.37


[163-180]:
1lura_PU4_163-180
CI=0.70


[181-205]:
1lura_PU4_181-205
CI=2.64


[206-236]:
1lura_PU4_206-236
CI=0.36


[237-257]:
1lura_PU4_237-257
CI=2.42


[258-292]:
1lura_PU4_258-292
CI=3.43


[293-323 ]:
1lura_PU4_293-323
CI=0.42


Level 5
PU
Molecule needs Java 1.4 Structure


[1-40]:
1lura_PU5_1-40
CI=3.27


[41-64]:
1lura_PU5_41-64
CI=0.54


[65-89]:
1lura_PU5_65-89
CI=2.71


[90-124]:
1lura_PU5_90-124
CI=1.80


[125-162]:
1lura_PU5_125-162
CI=2.56


[163-180]:
1lura_PU5_163-180
CI=0.70


[181-205]:
1lura_PU5_181-205
CI=2.64


[206-236]:
1lura_PU5_206-236
CI=0.36


[237-257]:
1lura_PU5_237-257
CI=2.42


[258-292]:
1lura_PU5_258-292
CI=3.43


[293-323 ]:
1lura_PU5_293-323
CI=0.42


Level 6
PU
Molecule needs Java 1.4 Structure


[1-21]:
1lura_PU6_1-21
CI=1.97


[22-40]:
1lura_PU6_22-40
CI=1.88


[41-64]:
1lura_PU6_41-64
CI=0.54


[65-89]:
1lura_PU6_65-89
CI=2.71


[90-124]:
1lura_PU6_90-124
CI=1.80


[125-162]:
1lura_PU6_125-162
CI=2.56


[163-180]:
1lura_PU6_163-180
CI=0.70


[181-205]:
1lura_PU6_181-205
CI=2.64


[206-236]:
1lura_PU6_206-236
CI=0.36


[237-257]:
1lura_PU6_237-257
CI=2.42


[258-292]:
1lura_PU6_258-292
CI=3.43


[293-323 ]:
1lura_PU6_293-323
CI=0.42


Level 7
PU
Molecule needs Java 1.4 Structure


[1-21]:
1lura_PU7_1-21
CI=1.97


[22-40]:
1lura_PU7_22-40
CI=1.88


[41-64]:
1lura_PU7_41-64
CI=0.54


[65-89]:
1lura_PU7_65-89
CI=2.71


[90-107]:
1lura_PU7_90-107
CI=0.30


[108-124]:
1lura_PU7_108-124
CI=0.11


[125-162]:
1lura_PU7_125-162
CI=2.56


[163-180]:
1lura_PU7_163-180
CI=0.70


[181-205]:
1lura_PU7_181-205
CI=2.64


[206-236]:
1lura_PU7_206-236
CI=0.36


[237-257]:
1lura_PU7_237-257
CI=2.42


[258-292]:
1lura_PU7_258-292
CI=3.43


[293-323 ]:
1lura_PU7_293-323
CI=0.42


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-21]:
1lura_PU_1-21
CI=1.97


[22-40]:
1lura_PU_22-40
CI=1.88


[41-64]:
1lura_PU_41-64
CI=0.54


[65-89]:
1lura_PU_65-89
CI=2.71


[90-107]:
1lura_PU_90-107
CI=0.30


[108-124]:
1lura_PU_108-124
CI=0.11


[125-162]:
1lura_PU_125-162
CI=2.56


[163-180]:
1lura_PU_163-180
CI=0.70


[181-205]:
1lura_PU_181-205
CI=2.64


[206-236]:
1lura_PU_206-236
CI=0.36


[237-257]:
1lura_PU_237-257
CI=2.42


[258-274]:
1lura_PU_258-274
CI=0.00


[275-292]:
1lura_PU_275-292
CI=0.00


[293-323 ]:
1lura_PU_293-323
CI=0.42