Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-40]:
1luza_PU0_1-40
CI=2.65


[41-56]:
1luza_PU0_41-56
CI=0.00


[57-82 ]:
1luza_PU0_57-82
CI=2.64


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-18]:
1luza_PU_1-18
CI=0.10


[19-40]:
1luza_PU_19-40
CI=2.11


[41-56]:
1luza_PU_41-56
CI=0.00


[57-82 ]:
1luza_PU_57-82
CI=2.64