Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-38]:
1lwba_PU0_1-38
CI=0.90


[39-122 ]:
1lwba_PU0_39-122
CI=2.35


Level 1
PU
Molecule needs Java 1.4 Structure


[1-38]:
1lwba_PU1_1-38
CI=0.90


[39-66]:
1lwba_PU1_39-66
CI=1.74


[67-84]:
1lwba_PU1_67-84
CI=1.21


[85-122 ]:
1lwba_PU1_85-122
CI=1.19


Level 2
PU
Molecule needs Java 1.4 Structure


[1-22]:
1lwba_PU2_1-22
CI=0.69


[23-38]:
1lwba_PU2_23-38
CI=0.11


[39-66]:
1lwba_PU2_39-66
CI=1.74


[67-84]:
1lwba_PU2_67-84
CI=1.21


[85-122 ]:
1lwba_PU2_85-122
CI=1.19


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-22]:
1lwba_PU_1-22
CI=0.69


[23-38]:
1lwba_PU_23-38
CI=0.11


[39-66]:
1lwba_PU_39-66
CI=1.74


[67-84]:
1lwba_PU_67-84
CI=1.21


[85-106]:
1lwba_PU_85-106
CI=0.34


[107-122 ]:
1lwba_PU_107-122
CI=0.00