Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-80]:
1lxja_PU0_1-80
CI=3.31


[81-101 ]:
1lxja_PU0_81-101
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1lxja_PU1_1-16
CI=0.00


[17-35]:
1lxja_PU1_17-35
CI=0.00


[36-80]:
1lxja_PU1_36-80
CI=1.23


[81-101 ]:
1lxja_PU1_81-101
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-16]:
1lxja_PU_1-16
CI=0.00


[17-35]:
1lxja_PU_17-35
CI=0.00


[36-56]:
1lxja_PU_36-56
CI=1.88


[57-80]:
1lxja_PU_57-80
CI=0.32


[81-101 ]:
1lxja_PU_81-101
CI=0.00