Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-20]:
1lyca_PU0_1-20
CI=1.31


[21-336 ]:
1lyca_PU0_21-336
CI=4.49


Level 1
PU
Molecule needs Java 1.4 Structure


[1-20]:
1lyca_PU1_1-20
CI=1.31


[21-145]:
1lyca_PU1_21-145
CI=3.46


[146-336 ]:
1lyca_PU1_146-336
CI=3.56


Level 2
PU
Molecule needs Java 1.4 Structure


[1-20]:
1lyca_PU2_1-20
CI=1.31


[21-145]:
1lyca_PU2_21-145
CI=3.46


[146-273]:
1lyca_PU2_146-273
CI=3.52


[274-291]:
1lyca_PU2_274-291
CI=0.10


[292-336 ]:
1lyca_PU2_292-336
CI=1.66


Level 3
PU
Molecule needs Java 1.4 Structure


[1-20]:
1lyca_PU3_1-20
CI=1.31


[21-145]:
1lyca_PU3_21-145
CI=3.46


[146-174]:
1lyca_PU3_146-174
CI=0.82


[175-235]:
1lyca_PU3_175-235
CI=4.17


[236-273]:
1lyca_PU3_236-273
CI=0.40


[274-291]:
1lyca_PU3_274-291
CI=0.10


[292-336 ]:
1lyca_PU3_292-336
CI=1.66


Level 4
PU
Molecule needs Java 1.4 Structure


[1-20]:
1lyca_PU4_1-20
CI=1.31


[21-145]:
1lyca_PU4_21-145
CI=3.46


[146-174]:
1lyca_PU4_146-174
CI=0.82


[175-235]:
1lyca_PU4_175-235
CI=4.17


[236-253]:
1lyca_PU4_236-253
CI=0.52


[254-273]:
1lyca_PU4_254-273
CI=0.27


[274-291]:
1lyca_PU4_274-291
CI=0.10


[292-336 ]:
1lyca_PU4_292-336
CI=1.66


Level 5
PU
Molecule needs Java 1.4 Structure


[1-20]:
1lyca_PU5_1-20
CI=1.31


[21-40]:
1lyca_PU5_21-40
CI=1.12


[41-145]:
1lyca_PU5_41-145
CI=3.34


[146-174]:
1lyca_PU5_146-174
CI=0.82


[175-235]:
1lyca_PU5_175-235
CI=4.17


[236-253]:
1lyca_PU5_236-253
CI=0.52


[254-273]:
1lyca_PU5_254-273
CI=0.27


[274-291]:
1lyca_PU5_274-291
CI=0.10


[292-336 ]:
1lyca_PU5_292-336
CI=1.66


Level 6
PU
Molecule needs Java 1.4 Structure


[1-20]:
1lyca_PU6_1-20
CI=1.31


[21-40]:
1lyca_PU6_21-40
CI=1.12


[41-93]:
1lyca_PU6_41-93
CI=1.70


[94-135]:
1lyca_PU6_94-135
CI=1.76


[136-145]:
1lyca_PU6_136-145
CI=0.00


[146-174]:
1lyca_PU6_146-174
CI=0.82


[175-235]:
1lyca_PU6_175-235
CI=4.17


[236-253]:
1lyca_PU6_236-253
CI=0.52


[254-273]:
1lyca_PU6_254-273
CI=0.27


[274-291]:
1lyca_PU6_274-291
CI=0.10


[292-336 ]:
1lyca_PU6_292-336
CI=1.66


Level 7
PU
Molecule needs Java 1.4 Structure


[1-20]:
1lyca_PU7_1-20
CI=1.31


[21-40]:
1lyca_PU7_21-40
CI=1.12


[41-69]:
1lyca_PU7_41-69
CI=1.77


[70-93]:
1lyca_PU7_70-93
CI=0.78


[94-135]:
1lyca_PU7_94-135
CI=1.76


[136-145]:
1lyca_PU7_136-145
CI=0.00


[146-174]:
1lyca_PU7_146-174
CI=0.82


[175-235]:
1lyca_PU7_175-235
CI=4.17


[236-253]:
1lyca_PU7_236-253
CI=0.52


[254-273]:
1lyca_PU7_254-273
CI=0.27


[274-291]:
1lyca_PU7_274-291
CI=0.10


[292-336 ]:
1lyca_PU7_292-336
CI=1.66


Level 8
PU
Molecule needs Java 1.4 Structure


[1-20]:
1lyca_PU8_1-20
CI=1.31


[21-40]:
1lyca_PU8_21-40
CI=1.12


[41-69]:
1lyca_PU8_41-69
CI=1.77


[70-93]:
1lyca_PU8_70-93
CI=0.78


[94-110]:
1lyca_PU8_94-110
CI=0.86


[111-135]:
1lyca_PU8_111-135
CI=1.19


[136-145]:
1lyca_PU8_136-145
CI=0.00


[146-174]:
1lyca_PU8_146-174
CI=0.82


[175-235]:
1lyca_PU8_175-235
CI=4.17


[236-253]:
1lyca_PU8_236-253
CI=0.52


[254-273]:
1lyca_PU8_254-273
CI=0.27


[274-291]:
1lyca_PU8_274-291
CI=0.10


[292-336 ]:
1lyca_PU8_292-336
CI=1.66


Level 9
PU
Molecule needs Java 1.4 Structure


[1-20]:
1lyca_PU9_1-20
CI=1.31


[21-40]:
1lyca_PU9_21-40
CI=1.12


[41-69]:
1lyca_PU9_41-69
CI=1.77


[70-93]:
1lyca_PU9_70-93
CI=0.78


[94-110]:
1lyca_PU9_94-110
CI=0.86


[111-135]:
1lyca_PU9_111-135
CI=1.19


[136-145]:
1lyca_PU9_136-145
CI=0.00


[146-174]:
1lyca_PU9_146-174
CI=0.82


[175-207]:
1lyca_PU9_175-207
CI=3.22


[208-235]:
1lyca_PU9_208-235
CI=3.04


[236-253]:
1lyca_PU9_236-253
CI=0.52


[254-273]:
1lyca_PU9_254-273
CI=0.27


[274-291]:
1lyca_PU9_274-291
CI=0.10


[292-336 ]:
1lyca_PU9_292-336
CI=1.66


Level 10
PU
Molecule needs Java 1.4 Structure


[1-20]:
1lyca_PU10_1-20
CI=1.31


[21-40]:
1lyca_PU10_21-40
CI=1.12


[41-69]:
1lyca_PU10_41-69
CI=1.77


[70-93]:
1lyca_PU10_70-93
CI=0.78


[94-110]:
1lyca_PU10_94-110
CI=0.86


[111-135]:
1lyca_PU10_111-135
CI=1.19


[136-145]:
1lyca_PU10_136-145
CI=0.00


[146-174]:
1lyca_PU10_146-174
CI=0.82


[175-191]:
1lyca_PU10_175-191
CI=1.20


[192-207]:
1lyca_PU10_192-207
CI=0.92


[208-235]:
1lyca_PU10_208-235
CI=3.04


[236-253]:
1lyca_PU10_236-253
CI=0.52


[254-273]:
1lyca_PU10_254-273
CI=0.27


[274-291]:
1lyca_PU10_274-291
CI=0.10


[292-336 ]:
1lyca_PU10_292-336
CI=1.66


Final level 11

PU
Molecule needs Java 1.4 Structure


[1-20]:
1lyca_PU_1-20
CI=1.31


[21-40]:
1lyca_PU_21-40
CI=1.12


[41-69]:
1lyca_PU_41-69
CI=1.77


[70-93]:
1lyca_PU_70-93
CI=0.78


[94-110]:
1lyca_PU_94-110
CI=0.86


[111-135]:
1lyca_PU_111-135
CI=1.19


[136-145]:
1lyca_PU_136-145
CI=0.00


[146-174]:
1lyca_PU_146-174
CI=0.82


[175-191]:
1lyca_PU_175-191
CI=1.20


[192-207]:
1lyca_PU_192-207
CI=0.92


[208-235]:
1lyca_PU_208-235
CI=3.04


[236-253]:
1lyca_PU_236-253
CI=0.52


[254-273]:
1lyca_PU_254-273
CI=0.27


[274-291]:
1lyca_PU_274-291
CI=0.10


[292-311]:
1lyca_PU_292-311
CI=0.09


[312-336 ]:
1lyca_PU_312-336
CI=0.07