Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-30]:
1lyqa_PU0_1-30
CI=2.59


[31-84]:
1lyqa_PU0_31-84
CI=3.85


[85-101 ]:
1lyqa_PU0_85-101
CI=0.33


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-30]:
1lyqa_PU_1-30
CI=2.59


[31-52]:
1lyqa_PU_31-52
CI=1.45


[53-84]:
1lyqa_PU_53-84
CI=1.61


[85-101 ]:
1lyqa_PU_85-101
CI=0.33