Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-76]:
1lyva_PU0_1-76
CI=2.05


[77-213]:
1lyva_PU0_77-213
CI=3.55


[214-283 ]:
1lyva_PU0_214-283
CI=2.57


Level 1
PU
Molecule needs Java 1.4 Structure


[1-22]:
1lyva_PU1_1-22
CI=0.00


[23-76]:
1lyva_PU1_23-76
CI=2.88


[77-213]:
1lyva_PU1_77-213
CI=3.55


[214-283 ]:
1lyva_PU1_214-283
CI=2.57


Level 2
PU
Molecule needs Java 1.4 Structure


[1-22]:
1lyva_PU2_1-22
CI=0.00


[23-76]:
1lyva_PU2_23-76
CI=2.88


[77-191]:
1lyva_PU2_77-191
CI=3.74


[192-213]:
1lyva_PU2_192-213
CI=0.76


[214-283 ]:
1lyva_PU2_214-283
CI=2.57


Level 3
PU
Molecule needs Java 1.4 Structure


[1-22]:
1lyva_PU3_1-22
CI=0.00


[23-76]:
1lyva_PU3_23-76
CI=2.88


[77-171]:
1lyva_PU3_77-171
CI=4.08


[172-191]:
1lyva_PU3_172-191
CI=0.00


[192-213]:
1lyva_PU3_192-213
CI=0.76


[214-283 ]:
1lyva_PU3_214-283
CI=2.57


Level 4
PU
Molecule needs Java 1.4 Structure


[1-22]:
1lyva_PU4_1-22
CI=0.00


[23-53]:
1lyva_PU4_23-53
CI=1.89


[54-76]:
1lyva_PU4_54-76
CI=2.46


[77-171]:
1lyva_PU4_77-171
CI=4.08


[172-191]:
1lyva_PU4_172-191
CI=0.00


[192-213]:
1lyva_PU4_192-213
CI=0.76


[214-283 ]:
1lyva_PU4_214-283
CI=2.57


Level 5
PU
Molecule needs Java 1.4 Structure


[1-22]:
1lyva_PU5_1-22
CI=0.00


[23-53]:
1lyva_PU5_23-53
CI=1.89


[54-76]:
1lyva_PU5_54-76
CI=2.46


[77-99]:
1lyva_PU5_77-99
CI=0.23


[100-115]:
1lyva_PU5_100-115
CI=0.80


[116-171]:
1lyva_PU5_116-171
CI=4.10


[172-191]:
1lyva_PU5_172-191
CI=0.00


[192-213]:
1lyva_PU5_192-213
CI=0.76


[214-283 ]:
1lyva_PU5_214-283
CI=2.57


Level 6
PU
Molecule needs Java 1.4 Structure


[1-22]:
1lyva_PU6_1-22
CI=0.00


[23-53]:
1lyva_PU6_23-53
CI=1.89


[54-76]:
1lyva_PU6_54-76
CI=2.46


[77-99]:
1lyva_PU6_77-99
CI=0.23


[100-115]:
1lyva_PU6_100-115
CI=0.80


[116-171]:
1lyva_PU6_116-171
CI=4.10


[172-191]:
1lyva_PU6_172-191
CI=0.00


[192-213]:
1lyva_PU6_192-213
CI=0.76


[214-261]:
1lyva_PU6_214-261
CI=2.13


[262-283 ]:
1lyva_PU6_262-283
CI=0.34


Level 7
PU
Molecule needs Java 1.4 Structure


[1-22]:
1lyva_PU7_1-22
CI=0.00


[23-53]:
1lyva_PU7_23-53
CI=1.89


[54-76]:
1lyva_PU7_54-76
CI=2.46


[77-99]:
1lyva_PU7_77-99
CI=0.23


[100-115]:
1lyva_PU7_100-115
CI=0.80


[116-171]:
1lyva_PU7_116-171
CI=4.10


[172-191]:
1lyva_PU7_172-191
CI=0.00


[192-213]:
1lyva_PU7_192-213
CI=0.76


[214-232]:
1lyva_PU7_214-232
CI=1.53


[233-261]:
1lyva_PU7_233-261
CI=0.71


[262-283 ]:
1lyva_PU7_262-283
CI=0.34


Level 8
PU
Molecule needs Java 1.4 Structure


[1-22]:
1lyva_PU8_1-22
CI=0.00


[23-53]:
1lyva_PU8_23-53
CI=1.89


[54-76]:
1lyva_PU8_54-76
CI=2.46


[77-99]:
1lyva_PU8_77-99
CI=0.23


[100-115]:
1lyva_PU8_100-115
CI=0.80


[116-132]:
1lyva_PU8_116-132
CI=2.27


[133-171]:
1lyva_PU8_133-171
CI=3.10


[172-191]:
1lyva_PU8_172-191
CI=0.00


[192-213]:
1lyva_PU8_192-213
CI=0.76


[214-232]:
1lyva_PU8_214-232
CI=1.53


[233-261]:
1lyva_PU8_233-261
CI=0.71


[262-283 ]:
1lyva_PU8_262-283
CI=0.34


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-22]:
1lyva_PU_1-22
CI=0.00


[23-53]:
1lyva_PU_23-53
CI=1.89


[54-76]:
1lyva_PU_54-76
CI=2.46


[77-99]:
1lyva_PU_77-99
CI=0.23


[100-115]:
1lyva_PU_100-115
CI=0.80


[116-132]:
1lyva_PU_116-132
CI=2.27


[133-149]:
1lyva_PU_133-149
CI=2.08


[150-171]:
1lyva_PU_150-171
CI=0.86


[172-191]:
1lyva_PU_172-191
CI=0.00


[192-213]:
1lyva_PU_192-213
CI=0.76


[214-232]:
1lyva_PU_214-232
CI=1.53


[233-261]:
1lyva_PU_233-261
CI=0.71


[262-283 ]:
1lyva_PU_262-283
CI=0.34