Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-26]:
1m0da_PU0_1-26
CI=0.07


[27-129 ]:
1m0da_PU0_27-129
CI=2.35


Level 1
PU
Molecule needs Java 1.4 Structure


[1-26]:
1m0da_PU1_1-26
CI=0.07


[27-80]:
1m0da_PU1_27-80
CI=1.75


[81-101]:
1m0da_PU1_81-101
CI=1.62


[102-129 ]:
1m0da_PU1_102-129
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-26]:
1m0da_PU_1-26
CI=0.07


[27-50]:
1m0da_PU_27-50
CI=1.18


[51-80]:
1m0da_PU_51-80
CI=0.69


[81-101]:
1m0da_PU_81-101
CI=1.62


[102-129 ]:
1m0da_PU_102-129
CI=0.00