Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-24]:
1m16a_PU0_1-24
CI=0.00


[25-88]:
1m16a_PU0_25-88
CI=4.30


[89-142 ]:
1m16a_PU0_89-142
CI=3.90


Level 1
PU
Molecule needs Java 1.4 Structure


[1-24]:
1m16a_PU1_1-24
CI=0.00


[25-46]:
1m16a_PU1_25-46
CI=2.31


[47-88]:
1m16a_PU1_47-88
CI=3.69


[89-142 ]:
1m16a_PU1_89-142
CI=3.90


Level 2
PU
Molecule needs Java 1.4 Structure


[1-24]:
1m16a_PU2_1-24
CI=0.00


[25-46]:
1m16a_PU2_25-46
CI=2.31


[47-67]:
1m16a_PU2_47-67
CI=2.33


[68-88]:
1m16a_PU2_68-88
CI=3.11


[89-142 ]:
1m16a_PU2_89-142
CI=3.90


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-24]:
1m16a_PU_1-24
CI=0.00


[25-46]:
1m16a_PU_25-46
CI=2.31


[47-67]:
1m16a_PU_47-67
CI=2.33


[68-88]:
1m16a_PU_68-88
CI=3.11


[89-113]:
1m16a_PU_89-113
CI=3.02


[114-142 ]:
1m16a_PU_114-142
CI=2.13