Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-46]:
1m1fa_PU0_1-46
CI=3.63


[47-70]:
1m1fa_PU0_47-70
CI=3.05


[71-107 ]:
1m1fa_PU0_71-107
CI=0.45


Level 1
PU
Molecule needs Java 1.4 Structure


[1-46]:
1m1fa_PU1_1-46
CI=3.63


[47-70]:
1m1fa_PU1_47-70
CI=3.05


[71-89]:
1m1fa_PU1_71-89
CI=0.09


[90-107 ]:
1m1fa_PU1_90-107
CI=0.10


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-27]:
1m1fa_PU_1-27
CI=2.89


[28-46]:
1m1fa_PU_28-46
CI=0.97


[47-70]:
1m1fa_PU_47-70
CI=3.05


[71-89]:
1m1fa_PU_71-89
CI=0.09


[90-107 ]:
1m1fa_PU_90-107
CI=0.10