Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-72]:
1m1qa_PU0_1-72
CI=1.99


[73-90 ]:
1m1qa_PU0_73-90
CI=0.92


Level 1
PU
Molecule needs Java 1.4 Structure


[1-23]:
1m1qa_PU1_1-23
CI=1.11


[24-60]:
1m1qa_PU1_24-60
CI=1.27


[61-72]:
1m1qa_PU1_61-72
CI=0.44


[73-90 ]:
1m1qa_PU1_73-90
CI=0.92


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-23]:
1m1qa_PU_1-23
CI=1.11


[24-42]:
1m1qa_PU_24-42
CI=0.19


[43-60]:
1m1qa_PU_43-60
CI=0.10


[61-72]:
1m1qa_PU_61-72
CI=0.44


[73-90 ]:
1m1qa_PU_73-90
CI=0.92