Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-101]:
1m33a_PU0_1-101
CI=4.49


[102-238]:
1m33a_PU0_102-238
CI=3.28


[239-251 ]:
1m33a_PU0_239-251
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-101]:
1m33a_PU1_1-101
CI=4.49


[102-119]:
1m33a_PU1_102-119
CI=1.55


[120-176]:
1m33a_PU1_120-176
CI=1.10


[177-238]:
1m33a_PU1_177-238
CI=2.67


[239-251 ]:
1m33a_PU1_239-251
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-101]:
1m33a_PU2_1-101
CI=4.49


[102-119]:
1m33a_PU2_102-119
CI=1.55


[120-135]:
1m33a_PU2_120-135
CI=0.11


[136-165]:
1m33a_PU2_136-165
CI=0.99


[166-176]:
1m33a_PU2_166-176
CI=0.00


[177-238]:
1m33a_PU2_177-238
CI=2.67


[239-251 ]:
1m33a_PU2_239-251
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-101]:
1m33a_PU3_1-101
CI=4.49


[102-119]:
1m33a_PU3_102-119
CI=1.55


[120-135]:
1m33a_PU3_120-135
CI=0.11


[136-165]:
1m33a_PU3_136-165
CI=0.99


[166-176]:
1m33a_PU3_166-176
CI=0.00


[177-193]:
1m33a_PU3_177-193
CI=0.00


[194-238]:
1m33a_PU3_194-238
CI=3.07


[239-251 ]:
1m33a_PU3_239-251
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-56]:
1m33a_PU4_1-56
CI=3.85


[57-101]:
1m33a_PU4_57-101
CI=2.72


[102-119]:
1m33a_PU4_102-119
CI=1.55


[120-135]:
1m33a_PU4_120-135
CI=0.11


[136-165]:
1m33a_PU4_136-165
CI=0.99


[166-176]:
1m33a_PU4_166-176
CI=0.00


[177-193]:
1m33a_PU4_177-193
CI=0.00


[194-238]:
1m33a_PU4_194-238
CI=3.07


[239-251 ]:
1m33a_PU4_239-251
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-56]:
1m33a_PU5_1-56
CI=3.85


[57-101]:
1m33a_PU5_57-101
CI=2.72


[102-119]:
1m33a_PU5_102-119
CI=1.55


[120-135]:
1m33a_PU5_120-135
CI=0.11


[136-165]:
1m33a_PU5_136-165
CI=0.99


[166-176]:
1m33a_PU5_166-176
CI=0.00


[177-193]:
1m33a_PU5_177-193
CI=0.00


[194-222]:
1m33a_PU5_194-222
CI=1.96


[223-238]:
1m33a_PU5_223-238
CI=0.57


[239-251 ]:
1m33a_PU5_239-251
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-56]:
1m33a_PU6_1-56
CI=3.85


[57-85]:
1m33a_PU6_57-85
CI=0.84


[86-101]:
1m33a_PU6_86-101
CI=0.92


[102-119]:
1m33a_PU6_102-119
CI=1.55


[120-135]:
1m33a_PU6_120-135
CI=0.11


[136-165]:
1m33a_PU6_136-165
CI=0.99


[166-176]:
1m33a_PU6_166-176
CI=0.00


[177-193]:
1m33a_PU6_177-193
CI=0.00


[194-222]:
1m33a_PU6_194-222
CI=1.96


[223-238]:
1m33a_PU6_223-238
CI=0.57


[239-251 ]:
1m33a_PU6_239-251
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-37]:
1m33a_PU7_1-37
CI=0.77


[38-56]:
1m33a_PU7_38-56
CI=0.99


[57-85]:
1m33a_PU7_57-85
CI=0.84


[86-101]:
1m33a_PU7_86-101
CI=0.92


[102-119]:
1m33a_PU7_102-119
CI=1.55


[120-135]:
1m33a_PU7_120-135
CI=0.11


[136-165]:
1m33a_PU7_136-165
CI=0.99


[166-176]:
1m33a_PU7_166-176
CI=0.00


[177-193]:
1m33a_PU7_177-193
CI=0.00


[194-222]:
1m33a_PU7_194-222
CI=1.96


[223-238]:
1m33a_PU7_223-238
CI=0.57


[239-251 ]:
1m33a_PU7_239-251
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-17]:
1m33a_PU_1-17
CI=0.00


[18-37]:
1m33a_PU_18-37
CI=0.19


[38-56]:
1m33a_PU_38-56
CI=0.99


[57-85]:
1m33a_PU_57-85
CI=0.84


[86-101]:
1m33a_PU_86-101
CI=0.92


[102-119]:
1m33a_PU_102-119
CI=1.55


[120-135]:
1m33a_PU_120-135
CI=0.11


[136-165]:
1m33a_PU_136-165
CI=0.99


[166-176]:
1m33a_PU_166-176
CI=0.00


[177-193]:
1m33a_PU_177-193
CI=0.00


[194-222]:
1m33a_PU_194-222
CI=1.96


[223-238]:
1m33a_PU_223-238
CI=0.57


[239-251 ]:
1m33a_PU_239-251
CI=0.00