Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-122]:
1m3ka_PU0_1-122
CI=3.75


[123-138]:
1m3ka_PU0_123-138
CI=0.23


[139-392 ]:
1m3ka_PU0_139-392
CI=4.18


Level 1
PU
Molecule needs Java 1.4 Structure


[1-122]:
1m3ka_PU1_1-122
CI=3.75


[123-138]:
1m3ka_PU1_123-138
CI=0.23


[139-199]:
1m3ka_PU1_139-199
CI=0.41


[200-215]:
1m3ka_PU1_200-215
CI=1.97


[216-392 ]:
1m3ka_PU1_216-392
CI=4.11


Level 2
PU
Molecule needs Java 1.4 Structure


[1-122]:
1m3ka_PU2_1-122
CI=3.75


[123-138]:
1m3ka_PU2_123-138
CI=0.23


[139-170]:
1m3ka_PU2_139-170
CI=0.65


[171-199]:
1m3ka_PU2_171-199
CI=0.13


[200-215]:
1m3ka_PU2_200-215
CI=1.97


[216-392 ]:
1m3ka_PU2_216-392
CI=4.11


Level 3
PU
Molecule needs Java 1.4 Structure


[1-122]:
1m3ka_PU3_1-122
CI=3.75


[123-138]:
1m3ka_PU3_123-138
CI=0.23


[139-170]:
1m3ka_PU3_139-170
CI=0.65


[171-199]:
1m3ka_PU3_171-199
CI=0.13


[200-215]:
1m3ka_PU3_200-215
CI=1.97


[216-245]:
1m3ka_PU3_216-245
CI=1.20


[246-392 ]:
1m3ka_PU3_246-392
CI=4.51


Level 4
PU
Molecule needs Java 1.4 Structure


[1-44]:
1m3ka_PU4_1-44
CI=0.86


[45-122]:
1m3ka_PU4_45-122
CI=3.96


[123-138]:
1m3ka_PU4_123-138
CI=0.23


[139-170]:
1m3ka_PU4_139-170
CI=0.65


[171-199]:
1m3ka_PU4_171-199
CI=0.13


[200-215]:
1m3ka_PU4_200-215
CI=1.97


[216-245]:
1m3ka_PU4_216-245
CI=1.20


[246-392 ]:
1m3ka_PU4_246-392
CI=4.51


Level 5
PU
Molecule needs Java 1.4 Structure


[1-44]:
1m3ka_PU5_1-44
CI=0.86


[45-60]:
1m3ka_PU5_45-60
CI=0.00


[61-84]:
1m3ka_PU5_61-84
CI=1.25


[85-122]:
1m3ka_PU5_85-122
CI=1.54


[123-138]:
1m3ka_PU5_123-138
CI=0.23


[139-170]:
1m3ka_PU5_139-170
CI=0.65


[171-199]:
1m3ka_PU5_171-199
CI=0.13


[200-215]:
1m3ka_PU5_200-215
CI=1.97


[216-245]:
1m3ka_PU5_216-245
CI=1.20


[246-392 ]:
1m3ka_PU5_246-392
CI=4.51


Level 6
PU
Molecule needs Java 1.4 Structure


[1-25]:
1m3ka_PU6_1-25
CI=0.37


[26-44]:
1m3ka_PU6_26-44
CI=0.00


[45-60]:
1m3ka_PU6_45-60
CI=0.00


[61-84]:
1m3ka_PU6_61-84
CI=1.25


[85-122]:
1m3ka_PU6_85-122
CI=1.54


[123-138]:
1m3ka_PU6_123-138
CI=0.23


[139-170]:
1m3ka_PU6_139-170
CI=0.65


[171-199]:
1m3ka_PU6_171-199
CI=0.13


[200-215]:
1m3ka_PU6_200-215
CI=1.97


[216-245]:
1m3ka_PU6_216-245
CI=1.20


[246-392 ]:
1m3ka_PU6_246-392
CI=4.51


Level 7
PU
Molecule needs Java 1.4 Structure


[1-25]:
1m3ka_PU7_1-25
CI=0.37


[26-44]:
1m3ka_PU7_26-44
CI=0.00


[45-60]:
1m3ka_PU7_45-60
CI=0.00


[61-84]:
1m3ka_PU7_61-84
CI=1.25


[85-122]:
1m3ka_PU7_85-122
CI=1.54


[123-138]:
1m3ka_PU7_123-138
CI=0.23


[139-170]:
1m3ka_PU7_139-170
CI=0.65


[171-199]:
1m3ka_PU7_171-199
CI=0.13


[200-215]:
1m3ka_PU7_200-215
CI=1.97


[216-245]:
1m3ka_PU7_216-245
CI=1.20


[246-271]:
1m3ka_PU7_246-271
CI=0.14


[272-392 ]:
1m3ka_PU7_272-392
CI=4.44


Level 8
PU
Molecule needs Java 1.4 Structure


[1-25]:
1m3ka_PU8_1-25
CI=0.37


[26-44]:
1m3ka_PU8_26-44
CI=0.00


[45-60]:
1m3ka_PU8_45-60
CI=0.00


[61-84]:
1m3ka_PU8_61-84
CI=1.25


[85-122]:
1m3ka_PU8_85-122
CI=1.54


[123-138]:
1m3ka_PU8_123-138
CI=0.23


[139-170]:
1m3ka_PU8_139-170
CI=0.65


[171-199]:
1m3ka_PU8_171-199
CI=0.13


[200-215]:
1m3ka_PU8_200-215
CI=1.97


[216-245]:
1m3ka_PU8_216-245
CI=1.20


[246-271]:
1m3ka_PU8_246-271
CI=0.14


[272-310]:
1m3ka_PU8_272-310
CI=1.26


[311-370]:
1m3ka_PU8_311-370
CI=1.74


[371-392 ]:
1m3ka_PU8_371-392
CI=2.39


Level 9
PU
Molecule needs Java 1.4 Structure


[1-25]:
1m3ka_PU9_1-25
CI=0.37


[26-44]:
1m3ka_PU9_26-44
CI=0.00


[45-60]:
1m3ka_PU9_45-60
CI=0.00


[61-84]:
1m3ka_PU9_61-84
CI=1.25


[85-122]:
1m3ka_PU9_85-122
CI=1.54


[123-138]:
1m3ka_PU9_123-138
CI=0.23


[139-170]:
1m3ka_PU9_139-170
CI=0.65


[171-199]:
1m3ka_PU9_171-199
CI=0.13


[200-215]:
1m3ka_PU9_200-215
CI=1.97


[216-245]:
1m3ka_PU9_216-245
CI=1.20


[246-271]:
1m3ka_PU9_246-271
CI=0.14


[272-310]:
1m3ka_PU9_272-310
CI=1.26


[311-347]:
1m3ka_PU9_311-347
CI=1.69


[348-370]:
1m3ka_PU9_348-370
CI=0.31


[371-392 ]:
1m3ka_PU9_371-392
CI=2.39


Level 10
PU
Molecule needs Java 1.4 Structure


[1-25]:
1m3ka_PU10_1-25
CI=0.37


[26-44]:
1m3ka_PU10_26-44
CI=0.00


[45-60]:
1m3ka_PU10_45-60
CI=0.00


[61-84]:
1m3ka_PU10_61-84
CI=1.25


[85-122]:
1m3ka_PU10_85-122
CI=1.54


[123-138]:
1m3ka_PU10_123-138
CI=0.23


[139-170]:
1m3ka_PU10_139-170
CI=0.65


[171-199]:
1m3ka_PU10_171-199
CI=0.13


[200-215]:
1m3ka_PU10_200-215
CI=1.97


[216-245]:
1m3ka_PU10_216-245
CI=1.20


[246-271]:
1m3ka_PU10_246-271
CI=0.14


[272-294]:
1m3ka_PU10_272-294
CI=0.41


[295-310]:
1m3ka_PU10_295-310
CI=0.22


[311-347]:
1m3ka_PU10_311-347
CI=1.69


[348-370]:
1m3ka_PU10_348-370
CI=0.31


[371-392 ]:
1m3ka_PU10_371-392
CI=2.39


Level 11
PU
Molecule needs Java 1.4 Structure


[1-25]:
1m3ka_PU11_1-25
CI=0.37


[26-44]:
1m3ka_PU11_26-44
CI=0.00


[45-60]:
1m3ka_PU11_45-60
CI=0.00


[61-84]:
1m3ka_PU11_61-84
CI=1.25


[85-101]:
1m3ka_PU11_85-101
CI=0.31


[102-122]:
1m3ka_PU11_102-122
CI=0.44


[123-138]:
1m3ka_PU11_123-138
CI=0.23


[139-170]:
1m3ka_PU11_139-170
CI=0.65


[171-199]:
1m3ka_PU11_171-199
CI=0.13


[200-215]:
1m3ka_PU11_200-215
CI=1.97


[216-245]:
1m3ka_PU11_216-245
CI=1.20


[246-271]:
1m3ka_PU11_246-271
CI=0.14


[272-294]:
1m3ka_PU11_272-294
CI=0.41


[295-310]:
1m3ka_PU11_295-310
CI=0.22


[311-347]:
1m3ka_PU11_311-347
CI=1.69


[348-370]:
1m3ka_PU11_348-370
CI=0.31


[371-392 ]:
1m3ka_PU11_371-392
CI=2.39


Final level 12

PU
Molecule needs Java 1.4 Structure


[1-25]:
1m3ka_PU_1-25
CI=0.37


[26-44]:
1m3ka_PU_26-44
CI=0.00


[45-60]:
1m3ka_PU_45-60
CI=0.00


[61-84]:
1m3ka_PU_61-84
CI=1.25


[85-101]:
1m3ka_PU_85-101
CI=0.31


[102-122]:
1m3ka_PU_102-122
CI=0.44


[123-138]:
1m3ka_PU_123-138
CI=0.23


[139-170]:
1m3ka_PU_139-170
CI=0.65


[171-199]:
1m3ka_PU_171-199
CI=0.13


[200-215]:
1m3ka_PU_200-215
CI=1.97


[216-245]:
1m3ka_PU_216-245
CI=1.20


[246-271]:
1m3ka_PU_246-271
CI=0.14


[272-294]:
1m3ka_PU_272-294
CI=0.41


[295-310]:
1m3ka_PU_295-310
CI=0.22


[311-331]:
1m3ka_PU_311-331
CI=0.27


[332-347]:
1m3ka_PU_332-347
CI=0.00


[348-370]:
1m3ka_PU_348-370
CI=0.31


[371-392 ]:
1m3ka_PU_371-392
CI=2.39