Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-73]:
1m45b_PU0_1-73
CI=1.87


[74-142 ]:
1m45b_PU0_74-142
CI=1.61


Level 1
PU
Molecule needs Java 1.4 Structure


[1-73]:
1m45b_PU1_1-73
CI=1.87


[74-99]:
1m45b_PU1_74-99
CI=0.72


[100-121]:
1m45b_PU1_100-121
CI=0.76


[122-142 ]:
1m45b_PU1_122-142
CI=0.35


Level 2
PU
Molecule needs Java 1.4 Structure


[1-33]:
1m45b_PU2_1-33
CI=1.31


[34-73]:
1m45b_PU2_34-73
CI=0.56


[74-99]:
1m45b_PU2_74-99
CI=0.72


[100-121]:
1m45b_PU2_100-121
CI=0.76


[122-142 ]:
1m45b_PU2_122-142
CI=0.35


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-33]:
1m45b_PU_1-33
CI=1.31


[34-51]:
1m45b_PU_34-51
CI=0.00


[52-73]:
1m45b_PU_52-73
CI=0.08


[74-99]:
1m45b_PU_74-99
CI=0.72


[100-121]:
1m45b_PU_100-121
CI=0.76


[122-142 ]:
1m45b_PU_122-142
CI=0.35