Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-127]:
1m4la_PU0_1-127
CI=3.52


[128-278]:
1m4la_PU0_128-278
CI=4.25


[279-307 ]:
1m4la_PU0_279-307
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-127]:
1m4la_PU1_1-127
CI=3.52


[128-182]:
1m4la_PU1_128-182
CI=3.66


[183-278]:
1m4la_PU1_183-278
CI=3.47


[279-307 ]:
1m4la_PU1_279-307
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-84]:
1m4la_PU2_1-84
CI=1.79


[85-102]:
1m4la_PU2_85-102
CI=0.72


[103-127]:
1m4la_PU2_103-127
CI=0.75


[128-182]:
1m4la_PU2_128-182
CI=3.66


[183-278]:
1m4la_PU2_183-278
CI=3.47


[279-307 ]:
1m4la_PU2_279-307
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-21]:
1m4la_PU3_1-21
CI=0.26


[22-65]:
1m4la_PU3_22-65
CI=1.97


[66-84]:
1m4la_PU3_66-84
CI=0.69


[85-102]:
1m4la_PU3_85-102
CI=0.72


[103-127]:
1m4la_PU3_103-127
CI=0.75


[128-182]:
1m4la_PU3_128-182
CI=3.66


[183-278]:
1m4la_PU3_183-278
CI=3.47


[279-307 ]:
1m4la_PU3_279-307
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-21]:
1m4la_PU4_1-21
CI=0.26


[22-65]:
1m4la_PU4_22-65
CI=1.97


[66-84]:
1m4la_PU4_66-84
CI=0.69


[85-102]:
1m4la_PU4_85-102
CI=0.72


[103-127]:
1m4la_PU4_103-127
CI=0.75


[128-182]:
1m4la_PU4_128-182
CI=3.66


[183-212]:
1m4la_PU4_183-212
CI=0.19


[213-237]:
1m4la_PU4_213-237
CI=0.30


[238-278]:
1m4la_PU4_238-278
CI=0.65


[279-307 ]:
1m4la_PU4_279-307
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-21]:
1m4la_PU5_1-21
CI=0.26


[22-65]:
1m4la_PU5_22-65
CI=1.97


[66-84]:
1m4la_PU5_66-84
CI=0.69


[85-102]:
1m4la_PU5_85-102
CI=0.72


[103-127]:
1m4la_PU5_103-127
CI=0.75


[128-182]:
1m4la_PU5_128-182
CI=3.66


[183-212]:
1m4la_PU5_183-212
CI=0.19


[213-237]:
1m4la_PU5_213-237
CI=0.30


[238-262]:
1m4la_PU5_238-262
CI=0.37


[263-278]:
1m4la_PU5_263-278
CI=0.00


[279-307 ]:
1m4la_PU5_279-307
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-21]:
1m4la_PU6_1-21
CI=0.26


[22-39]:
1m4la_PU6_22-39
CI=0.62


[40-65]:
1m4la_PU6_40-65
CI=0.22


[66-84]:
1m4la_PU6_66-84
CI=0.69


[85-102]:
1m4la_PU6_85-102
CI=0.72


[103-127]:
1m4la_PU6_103-127
CI=0.75


[128-182]:
1m4la_PU6_128-182
CI=3.66


[183-212]:
1m4la_PU6_183-212
CI=0.19


[213-237]:
1m4la_PU6_213-237
CI=0.30


[238-262]:
1m4la_PU6_238-262
CI=0.37


[263-278]:
1m4la_PU6_263-278
CI=0.00


[279-307 ]:
1m4la_PU6_279-307
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-21]:
1m4la_PU7_1-21
CI=0.26


[22-39]:
1m4la_PU7_22-39
CI=0.62


[40-65]:
1m4la_PU7_40-65
CI=0.22


[66-84]:
1m4la_PU7_66-84
CI=0.69


[85-102]:
1m4la_PU7_85-102
CI=0.72


[103-127]:
1m4la_PU7_103-127
CI=0.75


[128-166]:
1m4la_PU7_128-166
CI=3.24


[167-182]:
1m4la_PU7_167-182
CI=0.23


[183-212]:
1m4la_PU7_183-212
CI=0.19


[213-237]:
1m4la_PU7_213-237
CI=0.30


[238-262]:
1m4la_PU7_238-262
CI=0.37


[263-278]:
1m4la_PU7_263-278
CI=0.00


[279-307 ]:
1m4la_PU7_279-307
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-21]:
1m4la_PU_1-21
CI=0.26


[22-39]:
1m4la_PU_22-39
CI=0.62


[40-65]:
1m4la_PU_40-65
CI=0.22


[66-84]:
1m4la_PU_66-84
CI=0.69


[85-102]:
1m4la_PU_85-102
CI=0.72


[103-127]:
1m4la_PU_103-127
CI=0.75


[128-144]:
1m4la_PU_128-144
CI=2.19


[145-166]:
1m4la_PU_145-166
CI=1.95


[167-182]:
1m4la_PU_167-182
CI=0.23


[183-212]:
1m4la_PU_183-212
CI=0.19


[213-237]:
1m4la_PU_213-237
CI=0.30


[238-262]:
1m4la_PU_238-262
CI=0.37


[263-278]:
1m4la_PU_263-278
CI=0.00


[279-307 ]:
1m4la_PU_279-307
CI=0.00