Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-58]:
1m4ra_PU0_1-58
CI=0.29


[59-93]:
1m4ra_PU0_59-93
CI=1.17


[94-142 ]:
1m4ra_PU0_94-142
CI=0.23


Level 1
PU
Molecule needs Java 1.4 Structure


[1-35]:
1m4ra_PU1_1-35
CI=0.06


[36-58]:
1m4ra_PU1_36-58
CI=0.08


[59-93]:
1m4ra_PU1_59-93
CI=1.17


[94-142 ]:
1m4ra_PU1_94-142
CI=0.23


Level 2
PU
Molecule needs Java 1.4 Structure


[1-35]:
1m4ra_PU2_1-35
CI=0.06


[36-58]:
1m4ra_PU2_36-58
CI=0.08


[59-93]:
1m4ra_PU2_59-93
CI=1.17


[94-113]:
1m4ra_PU2_94-113
CI=0.00


[114-142 ]:
1m4ra_PU2_114-142
CI=0.38


Level 3
PU
Molecule needs Java 1.4 Structure


[1-17]:
1m4ra_PU3_1-17
CI=0.11


[18-35]:
1m4ra_PU3_18-35
CI=0.00


[36-58]:
1m4ra_PU3_36-58
CI=0.08


[59-93]:
1m4ra_PU3_59-93
CI=1.17


[94-113]:
1m4ra_PU3_94-113
CI=0.00


[114-142 ]:
1m4ra_PU3_114-142
CI=0.38


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-17]:
1m4ra_PU_1-17
CI=0.11


[18-35]:
1m4ra_PU_18-35
CI=0.00


[36-58]:
1m4ra_PU_36-58
CI=0.08


[59-75]:
1m4ra_PU_59-75
CI=0.21


[76-93]:
1m4ra_PU_76-93
CI=0.10


[94-113]:
1m4ra_PU_94-113
CI=0.00


[114-142 ]:
1m4ra_PU_114-142
CI=0.38