Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-38]:
1m6ka_PU0_1-38
CI=3.00


[39-174]:
1m6ka_PU0_39-174
CI=2.92


[175-249 ]:
1m6ka_PU0_175-249
CI=4.39


Level 1
PU
Molecule needs Java 1.4 Structure


[1-38]:
1m6ka_PU1_1-38
CI=3.00


[39-63]:
1m6ka_PU1_39-63
CI=0.30


[64-96]:
1m6ka_PU1_64-96
CI=1.82


[97-174]:
1m6ka_PU1_97-174
CI=1.93


[175-249 ]:
1m6ka_PU1_175-249
CI=4.39


Level 2
PU
Molecule needs Java 1.4 Structure


[1-38]:
1m6ka_PU2_1-38
CI=3.00


[39-63]:
1m6ka_PU2_39-63
CI=0.30


[64-96]:
1m6ka_PU2_64-96
CI=1.82


[97-151]:
1m6ka_PU2_97-151
CI=2.30


[152-174]:
1m6ka_PU2_152-174
CI=0.66


[175-249 ]:
1m6ka_PU2_175-249
CI=4.39


Level 3
PU
Molecule needs Java 1.4 Structure


[1-38]:
1m6ka_PU3_1-38
CI=3.00


[39-63]:
1m6ka_PU3_39-63
CI=0.30


[64-96]:
1m6ka_PU3_64-96
CI=1.82


[97-115]:
1m6ka_PU3_97-115
CI=0.09


[116-151]:
1m6ka_PU3_116-151
CI=2.32


[152-174]:
1m6ka_PU3_152-174
CI=0.66


[175-249 ]:
1m6ka_PU3_175-249
CI=4.39


Level 4
PU
Molecule needs Java 1.4 Structure


[1-38]:
1m6ka_PU4_1-38
CI=3.00


[39-63]:
1m6ka_PU4_39-63
CI=0.30


[64-96]:
1m6ka_PU4_64-96
CI=1.82


[97-115]:
1m6ka_PU4_97-115
CI=0.09


[116-151]:
1m6ka_PU4_116-151
CI=2.32


[152-174]:
1m6ka_PU4_152-174
CI=0.66


[175-190]:
1m6ka_PU4_175-190
CI=1.40


[191-237]:
1m6ka_PU4_191-237
CI=4.09


[238-249 ]:
1m6ka_PU4_238-249
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-38]:
1m6ka_PU5_1-38
CI=3.00


[39-63]:
1m6ka_PU5_39-63
CI=0.30


[64-80]:
1m6ka_PU5_64-80
CI=0.65


[81-96]:
1m6ka_PU5_81-96
CI=0.55


[97-115]:
1m6ka_PU5_97-115
CI=0.09


[116-151]:
1m6ka_PU5_116-151
CI=2.32


[152-174]:
1m6ka_PU5_152-174
CI=0.66


[175-190]:
1m6ka_PU5_175-190
CI=1.40


[191-237]:
1m6ka_PU5_191-237
CI=4.09


[238-249 ]:
1m6ka_PU5_238-249
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-38]:
1m6ka_PU6_1-38
CI=3.00


[39-63]:
1m6ka_PU6_39-63
CI=0.30


[64-80]:
1m6ka_PU6_64-80
CI=0.65


[81-96]:
1m6ka_PU6_81-96
CI=0.55


[97-115]:
1m6ka_PU6_97-115
CI=0.09


[116-135]:
1m6ka_PU6_116-135
CI=1.20


[136-151]:
1m6ka_PU6_136-151
CI=0.00


[152-174]:
1m6ka_PU6_152-174
CI=0.66


[175-190]:
1m6ka_PU6_175-190
CI=1.40


[191-237]:
1m6ka_PU6_191-237
CI=4.09


[238-249 ]:
1m6ka_PU6_238-249
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-38]:
1m6ka_PU7_1-38
CI=3.00


[39-63]:
1m6ka_PU7_39-63
CI=0.30


[64-80]:
1m6ka_PU7_64-80
CI=0.65


[81-96]:
1m6ka_PU7_81-96
CI=0.55


[97-115]:
1m6ka_PU7_97-115
CI=0.09


[116-135]:
1m6ka_PU7_116-135
CI=1.20


[136-151]:
1m6ka_PU7_136-151
CI=0.00


[152-174]:
1m6ka_PU7_152-174
CI=0.66


[175-190]:
1m6ka_PU7_175-190
CI=1.40


[191-219]:
1m6ka_PU7_191-219
CI=1.98


[220-237]:
1m6ka_PU7_220-237
CI=1.03


[238-249 ]:
1m6ka_PU7_238-249
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-22]:
1m6ka_PU_1-22
CI=0.41


[23-38]:
1m6ka_PU_23-38
CI=0.23


[39-63]:
1m6ka_PU_39-63
CI=0.30


[64-80]:
1m6ka_PU_64-80
CI=0.65


[81-96]:
1m6ka_PU_81-96
CI=0.55


[97-115]:
1m6ka_PU_97-115
CI=0.09


[116-135]:
1m6ka_PU_116-135
CI=1.20


[136-151]:
1m6ka_PU_136-151
CI=0.00


[152-174]:
1m6ka_PU_152-174
CI=0.66


[175-190]:
1m6ka_PU_175-190
CI=1.40


[191-219]:
1m6ka_PU_191-219
CI=1.98


[220-237]:
1m6ka_PU_220-237
CI=1.03


[238-249 ]:
1m6ka_PU_238-249
CI=0.00