Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-76]:
1m6pa_PU0_1-76
CI=3.76


[77-146 ]:
1m6pa_PU0_77-146
CI=4.89


Level 1
PU
Molecule needs Java 1.4 Structure


[1-28]:
1m6pa_PU1_1-28
CI=0.39


[29-76]:
1m6pa_PU1_29-76
CI=4.17


[77-146 ]:
1m6pa_PU1_77-146
CI=4.89


Level 2
PU
Molecule needs Java 1.4 Structure


[1-28]:
1m6pa_PU2_1-28
CI=0.39


[29-76]:
1m6pa_PU2_29-76
CI=4.17


[77-104]:
1m6pa_PU2_77-104
CI=2.05


[105-146 ]:
1m6pa_PU2_105-146
CI=4.18


Level 3
PU
Molecule needs Java 1.4 Structure


[1-28]:
1m6pa_PU3_1-28
CI=0.39


[29-45]:
1m6pa_PU3_29-45
CI=1.62


[46-76]:
1m6pa_PU3_46-76
CI=3.01


[77-104]:
1m6pa_PU3_77-104
CI=2.05


[105-146 ]:
1m6pa_PU3_105-146
CI=4.18


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-28]:
1m6pa_PU_1-28
CI=0.39


[29-45]:
1m6pa_PU_29-45
CI=1.62


[46-76]:
1m6pa_PU_46-76
CI=3.01


[77-104]:
1m6pa_PU_77-104
CI=2.05


[105-126]:
1m6pa_PU_105-126
CI=0.08


[127-146 ]:
1m6pa_PU_127-146
CI=0.19