Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-22]:
1m6sa_PU0_1-22
CI=0.09


[23-248]:
1m6sa_PU0_23-248
CI=4.73


[249-342 ]:
1m6sa_PU0_249-342
CI=3.04


Level 1
PU
Molecule needs Java 1.4 Structure


[1-22]:
1m6sa_PU1_1-22
CI=0.09


[23-69]:
1m6sa_PU1_23-69
CI=1.22


[70-168]:
1m6sa_PU1_70-168
CI=3.89


[169-248]:
1m6sa_PU1_169-248
CI=2.14


[249-342 ]:
1m6sa_PU1_249-342
CI=3.04


Level 2
PU
Molecule needs Java 1.4 Structure


[1-22]:
1m6sa_PU2_1-22
CI=0.09


[23-39]:
1m6sa_PU2_23-39
CI=1.52


[40-69]:
1m6sa_PU2_40-69
CI=0.89


[70-168]:
1m6sa_PU2_70-168
CI=3.89


[169-248]:
1m6sa_PU2_169-248
CI=2.14


[249-342 ]:
1m6sa_PU2_249-342
CI=3.04


Level 3
PU
Molecule needs Java 1.4 Structure


[1-22]:
1m6sa_PU3_1-22
CI=0.09


[23-39]:
1m6sa_PU3_23-39
CI=1.52


[40-69]:
1m6sa_PU3_40-69
CI=0.89


[70-168]:
1m6sa_PU3_70-168
CI=3.89


[169-205]:
1m6sa_PU3_169-205
CI=1.39


[206-228]:
1m6sa_PU3_206-228
CI=0.24


[229-248]:
1m6sa_PU3_229-248
CI=0.00


[249-342 ]:
1m6sa_PU3_249-342
CI=3.04


Level 4
PU
Molecule needs Java 1.4 Structure


[1-22]:
1m6sa_PU4_1-22
CI=0.09


[23-39]:
1m6sa_PU4_23-39
CI=1.52


[40-69]:
1m6sa_PU4_40-69
CI=0.89


[70-168]:
1m6sa_PU4_70-168
CI=3.89


[169-205]:
1m6sa_PU4_169-205
CI=1.39


[206-228]:
1m6sa_PU4_206-228
CI=0.24


[229-248]:
1m6sa_PU4_229-248
CI=0.00


[249-279]:
1m6sa_PU4_249-279
CI=1.63


[280-317]:
1m6sa_PU4_280-317
CI=2.62


[318-342 ]:
1m6sa_PU4_318-342
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-22]:
1m6sa_PU5_1-22
CI=0.09


[23-39]:
1m6sa_PU5_23-39
CI=1.52


[40-69]:
1m6sa_PU5_40-69
CI=0.89


[70-102]:
1m6sa_PU5_70-102
CI=2.58


[103-168]:
1m6sa_PU5_103-168
CI=2.58


[169-205]:
1m6sa_PU5_169-205
CI=1.39


[206-228]:
1m6sa_PU5_206-228
CI=0.24


[229-248]:
1m6sa_PU5_229-248
CI=0.00


[249-279]:
1m6sa_PU5_249-279
CI=1.63


[280-317]:
1m6sa_PU5_280-317
CI=2.62


[318-342 ]:
1m6sa_PU5_318-342
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-22]:
1m6sa_PU6_1-22
CI=0.09


[23-39]:
1m6sa_PU6_23-39
CI=1.52


[40-69]:
1m6sa_PU6_40-69
CI=0.89


[70-102]:
1m6sa_PU6_70-102
CI=2.58


[103-168]:
1m6sa_PU6_103-168
CI=2.58


[169-189]:
1m6sa_PU6_169-189
CI=0.35


[190-205]:
1m6sa_PU6_190-205
CI=0.70


[206-228]:
1m6sa_PU6_206-228
CI=0.24


[229-248]:
1m6sa_PU6_229-248
CI=0.00


[249-279]:
1m6sa_PU6_249-279
CI=1.63


[280-317]:
1m6sa_PU6_280-317
CI=2.62


[318-342 ]:
1m6sa_PU6_318-342
CI=0.00


Final level 7

PU
Molecule needs Java 1.4 Structure


[1-22]:
1m6sa_PU_1-22
CI=0.09


[23-39]:
1m6sa_PU_23-39
CI=1.52


[40-69]:
1m6sa_PU_40-69
CI=0.89


[70-102]:
1m6sa_PU_70-102
CI=2.58


[103-118]:
1m6sa_PU_103-118
CI=1.01


[119-134]:
1m6sa_PU_119-134
CI=0.91


[135-168]:
1m6sa_PU_135-168
CI=0.96


[169-189]:
1m6sa_PU_169-189
CI=0.35


[190-205]:
1m6sa_PU_190-205
CI=0.70


[206-228]:
1m6sa_PU_206-228
CI=0.24


[229-248]:
1m6sa_PU_229-248
CI=0.00


[249-279]:
1m6sa_PU_249-279
CI=1.63


[280-317]:
1m6sa_PU_280-317
CI=2.62


[318-342 ]:
1m6sa_PU_318-342
CI=0.00