Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-59]:
1mb3a_PU0_1-59
CI=3.42


[60-117 ]:
1mb3a_PU0_60-117
CI=2.11


Level 1
PU
Molecule needs Java 1.4 Structure


[1-59]:
1mb3a_PU1_1-59
CI=3.42


[60-96]:
1mb3a_PU1_60-96
CI=2.56


[97-117 ]:
1mb3a_PU1_97-117
CI=0.08


Level 2
PU
Molecule needs Java 1.4 Structure


[1-59]:
1mb3a_PU2_1-59
CI=3.42


[60-76]:
1mb3a_PU2_60-76
CI=0.65


[77-96]:
1mb3a_PU2_77-96
CI=2.60


[97-117 ]:
1mb3a_PU2_97-117
CI=0.08


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-32]:
1mb3a_PU_1-32
CI=2.61


[33-59]:
1mb3a_PU_33-59
CI=0.61


[60-76]:
1mb3a_PU_60-76
CI=0.65


[77-96]:
1mb3a_PU_77-96
CI=2.60


[97-117 ]:
1mb3a_PU_97-117
CI=0.08