Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-19]:
1mba0_PU0_1-19
CI=0.09


[20-69]:
1mba0_PU0_20-69
CI=1.26


[70-146 ]:
1mba0_PU0_70-146
CI=1.61


Level 1
PU
Molecule needs Java 1.4 Structure


[1-19]:
1mba0_PU1_1-19
CI=0.09


[20-69]:
1mba0_PU1_20-69
CI=1.26


[70-104]:
1mba0_PU1_70-104
CI=0.48


[105-135]:
1mba0_PU1_105-135
CI=1.03


[136-146 ]:
1mba0_PU1_136-146
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-19]:
1mba0_PU2_1-19
CI=0.09


[20-69]:
1mba0_PU2_20-69
CI=1.26


[70-88]:
1mba0_PU2_70-88
CI=0.58


[89-104]:
1mba0_PU2_89-104
CI=0.22


[105-135]:
1mba0_PU2_105-135
CI=1.03


[136-146 ]:
1mba0_PU2_136-146
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-19]:
1mba0_PU_1-19
CI=0.09


[20-42]:
1mba0_PU_20-42
CI=0.32


[43-69]:
1mba0_PU_43-69
CI=0.27


[70-88]:
1mba0_PU_70-88
CI=0.58


[89-104]:
1mba0_PU_89-104
CI=0.22


[105-135]:
1mba0_PU_105-135
CI=1.03


[136-146 ]:
1mba0_PU_136-146
CI=0.00