Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-49]:
1mc2a_PU0_1-49
CI=2.22


[50-88]:
1mc2a_PU0_50-88
CI=2.43


[89-122 ]:
1mc2a_PU0_89-122
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-49]:
1mc2a_PU1_1-49
CI=2.22


[50-88]:
1mc2a_PU1_50-88
CI=2.43


[89-106]:
1mc2a_PU1_89-106
CI=0.00


[107-122 ]:
1mc2a_PU1_107-122
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-20]:
1mc2a_PU2_1-20
CI=0.93


[21-49]:
1mc2a_PU2_21-49
CI=3.00


[50-88]:
1mc2a_PU2_50-88
CI=2.43


[89-106]:
1mc2a_PU2_89-106
CI=0.00


[107-122 ]:
1mc2a_PU2_107-122
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-20]:
1mc2a_PU_1-20
CI=0.93


[21-49]:
1mc2a_PU_21-49
CI=3.00


[50-68]:
1mc2a_PU_50-68
CI=0.10


[69-88]:
1mc2a_PU_69-88
CI=0.74


[89-106]:
1mc2a_PU_89-106
CI=0.00


[107-122 ]:
1mc2a_PU_107-122
CI=0.00