Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-39]:
1mdc0_PU0_1-39
CI=1.41


[40-95]:
1mdc0_PU0_40-95
CI=3.38


[96-129 ]:
1mdc0_PU0_96-129
CI=3.72


Level 1
PU
Molecule needs Java 1.4 Structure


[1-39]:
1mdc0_PU1_1-39
CI=1.41


[40-62]:
1mdc0_PU1_40-62
CI=2.38


[63-95]:
1mdc0_PU1_63-95
CI=3.35


[96-129 ]:
1mdc0_PU1_96-129
CI=3.72


Level 2
PU
Molecule needs Java 1.4 Structure


[1-39]:
1mdc0_PU2_1-39
CI=1.41


[40-62]:
1mdc0_PU2_40-62
CI=2.38


[63-79]:
1mdc0_PU2_63-79
CI=1.86


[80-95]:
1mdc0_PU2_80-95
CI=1.62


[96-129 ]:
1mdc0_PU2_96-129
CI=3.72


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-23]:
1mdc0_PU_1-23
CI=0.00


[24-39]:
1mdc0_PU_24-39
CI=0.00


[40-62]:
1mdc0_PU_40-62
CI=2.38


[63-79]:
1mdc0_PU_63-79
CI=1.86


[80-95]:
1mdc0_PU_80-95
CI=1.62


[96-129 ]:
1mdc0_PU_96-129
CI=3.72