Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-16]:
1mdoa_PU0_1-16
CI=0.00


[17-233]:
1mdoa_PU0_17-233
CI=4.78


[234-355 ]:
1mdoa_PU0_234-355
CI=1.96


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1mdoa_PU1_1-16
CI=0.00


[17-233]:
1mdoa_PU1_17-233
CI=4.78


[234-303]:
1mdoa_PU1_234-303
CI=1.16


[304-327]:
1mdoa_PU1_304-327
CI=0.54


[328-355 ]:
1mdoa_PU1_328-355
CI=0.13


Level 2
PU
Molecule needs Java 1.4 Structure


[1-16]:
1mdoa_PU2_1-16
CI=0.00


[17-233]:
1mdoa_PU2_17-233
CI=4.78


[234-275]:
1mdoa_PU2_234-275
CI=1.05


[276-303]:
1mdoa_PU2_276-303
CI=0.73


[304-327]:
1mdoa_PU2_304-327
CI=0.54


[328-355 ]:
1mdoa_PU2_328-355
CI=0.13


Level 3
PU
Molecule needs Java 1.4 Structure


[1-16]:
1mdoa_PU3_1-16
CI=0.00


[17-60]:
1mdoa_PU3_17-60
CI=0.69


[61-145]:
1mdoa_PU3_61-145
CI=3.61


[146-233]:
1mdoa_PU3_146-233
CI=3.43


[234-275]:
1mdoa_PU3_234-275
CI=1.05


[276-303]:
1mdoa_PU3_276-303
CI=0.73


[304-327]:
1mdoa_PU3_304-327
CI=0.54


[328-355 ]:
1mdoa_PU3_328-355
CI=0.13


Level 4
PU
Molecule needs Java 1.4 Structure


[1-16]:
1mdoa_PU4_1-16
CI=0.00


[17-60]:
1mdoa_PU4_17-60
CI=0.69


[61-145]:
1mdoa_PU4_61-145
CI=3.61


[146-186]:
1mdoa_PU4_146-186
CI=4.19


[187-217]:
1mdoa_PU4_187-217
CI=2.52


[218-233]:
1mdoa_PU4_218-233
CI=0.00


[234-275]:
1mdoa_PU4_234-275
CI=1.05


[276-303]:
1mdoa_PU4_276-303
CI=0.73


[304-327]:
1mdoa_PU4_304-327
CI=0.54


[328-355 ]:
1mdoa_PU4_328-355
CI=0.13


Level 5
PU
Molecule needs Java 1.4 Structure


[1-16]:
1mdoa_PU5_1-16
CI=0.00


[17-33]:
1mdoa_PU5_17-33
CI=0.11


[34-60]:
1mdoa_PU5_34-60
CI=0.97


[61-145]:
1mdoa_PU5_61-145
CI=3.61


[146-186]:
1mdoa_PU5_146-186
CI=4.19


[187-217]:
1mdoa_PU5_187-217
CI=2.52


[218-233]:
1mdoa_PU5_218-233
CI=0.00


[234-275]:
1mdoa_PU5_234-275
CI=1.05


[276-303]:
1mdoa_PU5_276-303
CI=0.73


[304-327]:
1mdoa_PU5_304-327
CI=0.54


[328-355 ]:
1mdoa_PU5_328-355
CI=0.13


Level 6
PU
Molecule needs Java 1.4 Structure


[1-16]:
1mdoa_PU6_1-16
CI=0.00


[17-33]:
1mdoa_PU6_17-33
CI=0.11


[34-60]:
1mdoa_PU6_34-60
CI=0.97


[61-91]:
1mdoa_PU6_61-91
CI=2.45


[92-145]:
1mdoa_PU6_92-145
CI=2.48


[146-186]:
1mdoa_PU6_146-186
CI=4.19


[187-217]:
1mdoa_PU6_187-217
CI=2.52


[218-233]:
1mdoa_PU6_218-233
CI=0.00


[234-275]:
1mdoa_PU6_234-275
CI=1.05


[276-303]:
1mdoa_PU6_276-303
CI=0.73


[304-327]:
1mdoa_PU6_304-327
CI=0.54


[328-355 ]:
1mdoa_PU6_328-355
CI=0.13


Final level 7

PU
Molecule needs Java 1.4 Structure


[1-16]:
1mdoa_PU_1-16
CI=0.00


[17-33]:
1mdoa_PU_17-33
CI=0.11


[34-60]:
1mdoa_PU_34-60
CI=0.97


[61-91]:
1mdoa_PU_61-91
CI=2.45


[92-145]:
1mdoa_PU_92-145
CI=2.48


[146-186]:
1mdoa_PU_146-186
CI=4.19


[187-217]:
1mdoa_PU_187-217
CI=2.52


[218-233]:
1mdoa_PU_218-233
CI=0.00


[234-254]:
1mdoa_PU_234-254
CI=0.00


[255-275]:
1mdoa_PU_255-275
CI=1.08


[276-303]:
1mdoa_PU_276-303
CI=0.73


[304-327]:
1mdoa_PU_304-327
CI=0.54


[328-355 ]:
1mdoa_PU_328-355
CI=0.13