Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-184]:
1mdwa_PU0_1-184
CI=3.79


[185-319 ]:
1mdwa_PU0_185-319
CI=3.95


Level 1
PU
Molecule needs Java 1.4 Structure


[1-184]:
1mdwa_PU1_1-184
CI=3.79


[185-244]:
1mdwa_PU1_185-244
CI=1.92


[245-305]:
1mdwa_PU1_245-305
CI=3.00


[306-319 ]:
1mdwa_PU1_306-319
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-184]:
1mdwa_PU2_1-184
CI=3.79


[185-211]:
1mdwa_PU2_185-211
CI=0.06


[212-244]:
1mdwa_PU2_212-244
CI=2.71


[245-305]:
1mdwa_PU2_245-305
CI=3.00


[306-319 ]:
1mdwa_PU2_306-319
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-32]:
1mdwa_PU3_1-32
CI=0.24


[33-51]:
1mdwa_PU3_33-51
CI=1.54


[52-184]:
1mdwa_PU3_52-184
CI=3.86


[185-211]:
1mdwa_PU3_185-211
CI=0.06


[212-244]:
1mdwa_PU3_212-244
CI=2.71


[245-305]:
1mdwa_PU3_245-305
CI=3.00


[306-319 ]:
1mdwa_PU3_306-319
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-32]:
1mdwa_PU4_1-32
CI=0.24


[33-51]:
1mdwa_PU4_33-51
CI=1.54


[52-95]:
1mdwa_PU4_52-95
CI=1.08


[96-134]:
1mdwa_PU4_96-134
CI=1.87


[135-184]:
1mdwa_PU4_135-184
CI=1.33


[185-211]:
1mdwa_PU4_185-211
CI=0.06


[212-244]:
1mdwa_PU4_212-244
CI=2.71


[245-305]:
1mdwa_PU4_245-305
CI=3.00


[306-319 ]:
1mdwa_PU4_306-319
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-32]:
1mdwa_PU5_1-32
CI=0.24


[33-51]:
1mdwa_PU5_33-51
CI=1.54


[52-68]:
1mdwa_PU5_52-68
CI=0.33


[69-95]:
1mdwa_PU5_69-95
CI=1.52


[96-134]:
1mdwa_PU5_96-134
CI=1.87


[135-184]:
1mdwa_PU5_135-184
CI=1.33


[185-211]:
1mdwa_PU5_185-211
CI=0.06


[212-244]:
1mdwa_PU5_212-244
CI=2.71


[245-305]:
1mdwa_PU5_245-305
CI=3.00


[306-319 ]:
1mdwa_PU5_306-319
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-32]:
1mdwa_PU6_1-32
CI=0.24


[33-51]:
1mdwa_PU6_33-51
CI=1.54


[52-68]:
1mdwa_PU6_52-68
CI=0.33


[69-95]:
1mdwa_PU6_69-95
CI=1.52


[96-134]:
1mdwa_PU6_96-134
CI=1.87


[135-163]:
1mdwa_PU6_135-163
CI=1.68


[164-184]:
1mdwa_PU6_164-184
CI=0.71


[185-211]:
1mdwa_PU6_185-211
CI=0.06


[212-244]:
1mdwa_PU6_212-244
CI=2.71


[245-305]:
1mdwa_PU6_245-305
CI=3.00


[306-319 ]:
1mdwa_PU6_306-319
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-32]:
1mdwa_PU7_1-32
CI=0.24


[33-51]:
1mdwa_PU7_33-51
CI=1.54


[52-68]:
1mdwa_PU7_52-68
CI=0.33


[69-95]:
1mdwa_PU7_69-95
CI=1.52


[96-115]:
1mdwa_PU7_96-115
CI=0.09


[116-134]:
1mdwa_PU7_116-134
CI=2.27


[135-163]:
1mdwa_PU7_135-163
CI=1.68


[164-184]:
1mdwa_PU7_164-184
CI=0.71


[185-211]:
1mdwa_PU7_185-211
CI=0.06


[212-244]:
1mdwa_PU7_212-244
CI=2.71


[245-305]:
1mdwa_PU7_245-305
CI=3.00


[306-319 ]:
1mdwa_PU7_306-319
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-32]:
1mdwa_PU8_1-32
CI=0.24


[33-51]:
1mdwa_PU8_33-51
CI=1.54


[52-68]:
1mdwa_PU8_52-68
CI=0.33


[69-95]:
1mdwa_PU8_69-95
CI=1.52


[96-115]:
1mdwa_PU8_96-115
CI=0.09


[116-134]:
1mdwa_PU8_116-134
CI=2.27


[135-163]:
1mdwa_PU8_135-163
CI=1.68


[164-184]:
1mdwa_PU8_164-184
CI=0.71


[185-211]:
1mdwa_PU8_185-211
CI=0.06


[212-244]:
1mdwa_PU8_212-244
CI=2.71


[245-261]:
1mdwa_PU8_245-261
CI=1.32


[262-297]:
1mdwa_PU8_262-297
CI=1.37


[298-305]:
1mdwa_PU8_298-305
CI=0.00


[306-319 ]:
1mdwa_PU8_306-319
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-32]:
1mdwa_PU9_1-32
CI=0.24


[33-51]:
1mdwa_PU9_33-51
CI=1.54


[52-68]:
1mdwa_PU9_52-68
CI=0.33


[69-95]:
1mdwa_PU9_69-95
CI=1.52


[96-115]:
1mdwa_PU9_96-115
CI=0.09


[116-134]:
1mdwa_PU9_116-134
CI=2.27


[135-163]:
1mdwa_PU9_135-163
CI=1.68


[164-184]:
1mdwa_PU9_164-184
CI=0.71


[185-211]:
1mdwa_PU9_185-211
CI=0.06


[212-244]:
1mdwa_PU9_212-244
CI=2.71


[245-261]:
1mdwa_PU9_245-261
CI=1.32


[262-281]:
1mdwa_PU9_262-281
CI=0.54


[282-297]:
1mdwa_PU9_282-297
CI=0.00


[298-305]:
1mdwa_PU9_298-305
CI=0.00


[306-319 ]:
1mdwa_PU9_306-319
CI=0.00


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-32]:
1mdwa_PU_1-32
CI=0.24


[33-51]:
1mdwa_PU_33-51
CI=1.54


[52-68]:
1mdwa_PU_52-68
CI=0.33


[69-95]:
1mdwa_PU_69-95
CI=1.52


[96-115]:
1mdwa_PU_96-115
CI=0.09


[116-134]:
1mdwa_PU_116-134
CI=2.27


[135-163]:
1mdwa_PU_135-163
CI=1.68


[164-184]:
1mdwa_PU_164-184
CI=0.71


[185-211]:
1mdwa_PU_185-211
CI=0.06


[212-228]:
1mdwa_PU_212-228
CI=0.11


[229-244]:
1mdwa_PU_229-244
CI=0.11


[245-261]:
1mdwa_PU_245-261
CI=1.32


[262-281]:
1mdwa_PU_262-281
CI=0.54


[282-297]:
1mdwa_PU_282-297
CI=0.00


[298-305]:
1mdwa_PU_298-305
CI=0.00


[306-319 ]:
1mdwa_PU_306-319
CI=0.00