Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-55]:
1mfga_PU0_1-55
CI=3.47


[56-95 ]:
1mfga_PU0_56-95
CI=2.01


Level 1
PU
Molecule needs Java 1.4 Structure


[1-20]:
1mfga_PU1_1-20
CI=0.09


[21-55]:
1mfga_PU1_21-55
CI=2.66


[56-95 ]:
1mfga_PU1_56-95
CI=2.01


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-20]:
1mfga_PU_1-20
CI=0.09


[21-55]:
1mfga_PU_21-55
CI=2.66


[56-79]:
1mfga_PU_56-79
CI=0.78


[80-95 ]:
1mfga_PU_80-95
CI=0.00