Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-23]:
1mg4a_PU0_1-23
CI=2.55


[24-52]:
1mg4a_PU0_24-52
CI=0.78


[53-101 ]:
1mg4a_PU0_53-101
CI=1.72


Level 1
PU
Molecule needs Java 1.4 Structure


[1-23]:
1mg4a_PU1_1-23
CI=2.55


[24-52]:
1mg4a_PU1_24-52
CI=0.78


[53-85]:
1mg4a_PU1_53-85
CI=2.03


[86-101 ]:
1mg4a_PU1_86-101
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-23]:
1mg4a_PU_1-23
CI=2.55


[24-52]:
1mg4a_PU_24-52
CI=0.78


[53-69]:
1mg4a_PU_53-69
CI=1.09


[70-85]:
1mg4a_PU_70-85
CI=0.11


[86-101 ]:
1mg4a_PU_86-101
CI=0.00