Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-56]:
1mi8a_PU0_1-56
CI=3.33


[57-116]:
1mi8a_PU0_57-116
CI=4.41


[117-141 ]:
1mi8a_PU0_117-141
CI=1.88


Level 1
PU
Molecule needs Java 1.4 Structure


[1-24]:
1mi8a_PU1_1-24
CI=2.27


[25-56]:
1mi8a_PU1_25-56
CI=2.63


[57-116]:
1mi8a_PU1_57-116
CI=4.41


[117-141 ]:
1mi8a_PU1_117-141
CI=1.88


Level 2
PU
Molecule needs Java 1.4 Structure


[1-24]:
1mi8a_PU2_1-24
CI=2.27


[25-56]:
1mi8a_PU2_25-56
CI=2.63


[57-73]:
1mi8a_PU2_57-73
CI=2.51


[74-108]:
1mi8a_PU2_74-108
CI=3.11


[109-116]:
1mi8a_PU2_109-116
CI=0.00


[117-141 ]:
1mi8a_PU2_117-141
CI=1.88


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-24]:
1mi8a_PU_1-24
CI=2.27


[25-56]:
1mi8a_PU_25-56
CI=2.63


[57-73]:
1mi8a_PU_57-73
CI=2.51


[74-90]:
1mi8a_PU_74-90
CI=1.75


[91-108]:
1mi8a_PU_91-108
CI=2.80


[109-116]:
1mi8a_PU_109-116
CI=0.00


[117-141 ]:
1mi8a_PU_117-141
CI=1.88