Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-30]:
1mj4a_PU0_1-30
CI=1.88


[31-46]:
1mj4a_PU0_31-46
CI=0.56


[47-79 ]:
1mj4a_PU0_47-79
CI=0.17


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-30]:
1mj4a_PU_1-30
CI=1.88


[31-46]:
1mj4a_PU_31-46
CI=0.56


[47-63]:
1mj4a_PU_47-63
CI=0.22


[64-79 ]:
1mj4a_PU_64-79
CI=0.00